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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_002450
- pan locus tag?: SAUPAN000388000
- symbol: JSNZ_002450
- pan gene symbol?: —
- synonym:
- product: DUF1433 domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_002450
- symbol: JSNZ_002450
- product: DUF1433 domain-containing protein
- replicon: chromosome
- strand: -
- coordinates: 2452414..2452833
- length: 420
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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121
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241
301
361ATGTCCAAAAAACATGTTTTTATAATTATTGGTGTCATATTGTGTATATGTACAGTTTCT
ACGGTCATGCATTTTAAAATGAAATATGATGAAAAAGAAAAACAAAAAGCGATTTACTAC
AAAGAACAACAAGAACGTATTACACTCTATCTTAAGCATAATACTAAAGAACCGAACACG
ATTAAATCTGTACATTTCACAAACTTGGAAACAAGTCCTATGGGAAGTGCTGTGATTGAA
GGATACATCAATGAAAATAAAGAAGATGATTTTACTGCTTATGCATCGCCTGAACATAAT
TATCAATTTGGTGGCGCTATGATAAAAAGTGAAGGAGTAGATAAATTATTAAAACCAGCA
CATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG60
120
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420
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_002450
- symbol: JSNZ_002450
- description: DUF1433 domain-containing protein
- length: 139
- theoretical pI: 8.22284
- theoretical MW: 16093.4
- GRAVY: -0.723022
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Carbohydrates, organic alcohols, and acids D-galactonate transporter (TIGR00893; HMM-score: 12)
- TheSEED:
- PFAM: no clan defined DUF1433; Protein of unknown function (DUF1433) (PF07252; HMM-score: 136.1)and 2 moreTRAP (CL0757) GAPT; GRB2-binding adapter (GAPT) (PF11770; HMM-score: 15.9)no clan defined DUF7299; Family of unknown function (DUF7299) (PF23973; HMM-score: 15.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helix: 1
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.7289
- Cell wall & surface Score: 0.0007
- Extracellular Score: 0.2704
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.252357
- TAT(Tat/SPI): 0.002363
- LIPO(Sec/SPII): 0.309312
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MSKKHVFIIIGVILCICTVSTVMHFKMKYDEKEKQKAIYYKEQQERITLYLKHNTKEPNTIKSVHFTNLETSPMGSAVIEGYINENKEDDFTAYASPEHNYQFGGAMIKSEGVDKLLKPAHERKSPEKIKEELDKKEGH
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_002450 < JSNZ_002451 < JSNZ_002452
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)