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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0421 [new locus tag: NWMN_RS02380 ]
  • pan locus tag?: SAUPAN002168000
  • symbol: NWMN_0421
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0421 [new locus tag: NWMN_RS02380 ]
  • symbol: NWMN_0421
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 472587..473261
  • length: 675
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGATAGATAAAAAATTAACATCACCGAAAATGACAGTGCCTTTATTTTTAATCGCGCTG
    ATTGTATTTATAGGTATGTTTTACAGTGTAGTGACAAATCAAGAATGGCTTAAAAATATA
    GATATGGGATCATTAACATGGTTTACAGATTATTTCGGTGAGCCACAACGTCAGTATGTT
    AACAATTTATTTAATTACTATATGACGTTTAGTGCGGAAATTGGAGATGTCAAAGGTGTC
    GTGTTGATTTCCATTATCGTCACAATCATACTGTTTATTAAACAGAGGCATTTAGCGGTT
    TGGTTTGTGACATATTTGGTTTCAGGTGTCATCATGAACAAATTAATTAAAGATACTGTT
    TTACGTCCAAGACCATATAATCATTTAGCCGTTGATACAGGCTTTTCATTTCCAAGTGGA
    CATTCCAACGCCAGCACATTATTATATTTCGCTTTAATGATCATAATTATTTCACTTGCT
    GCTAAGACAATAACAAAAGTGTTGAGTGCGCTAGTTATGGGAATATTATGGCTTAGCATA
    TTATTTTGTCGCCTTTATTTTCATGCGCATTACTTTTCAGATGTCATTGGCGGCACGTCA
    CTAGCAATCATTTGGGTAGCGTTATTCTTAATGGTATACCCATACTTTATTAATCATCGA
    CGACAACGCGTTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    675

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_0421 [new locus tag: NWMN_RS02380 ]
  • symbol: NWMN_0421
  • description: hypothetical protein
  • length: 224
  • theoretical pI: 9.93343
  • theoretical MW: 25755.6
  • GRAVY: 0.698214

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Protein and peptide secretion and trafficking heme exporter protein CcmB (TIGR01190; HMM-score: 14.2)
    Metabolism Transport and binding proteins Other heme exporter protein CcmB (TIGR01190; HMM-score: 14.2)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    pap2 (CL0525) PAP2; PAP2 superfamily (PF01569; HMM-score: 50.7)
    and 4 more
    PAP2_3; PAP2 superfamily (PF14378; HMM-score: 17.3)
    no clan defined DUF3671; Protein of unknown function (PF12420; HMM-score: 10.6)
    Fijivirus_P9-2; Fijivirus P9-2 protein (PF06837; HMM-score: 8.6)
    ABC-2 (CL0181) CcmB; CcmB protein (PF03379; HMM-score: 7.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.131476
    • TAT(Tat/SPI): 0.000354
    • LIPO(Sec/SPII): 0.006449
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MIDKKLTSPKMTVPLFLIALIVFIGMFYSVVTNQEWLKNIDMGSLTWFTDYFGEPQRQYVNNLFNYYMTFSAEIGDVKGVVLISIIVTIILFIKQRHLAVWFVTYLVSGVIMNKLIKDTVLRPRPYNHLAVDTGFSFPSGHSNASTLLYFALMIIIISLAAKTITKVLSALVMGILWLSILFCRLYFHAHYFSDVIGGTSLAIIWVALFLMVYPYFINHRRQRV

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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