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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_0568
- pan locus tag?: SAUPAN002452000
- symbol: NWMN_0568
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_0568
- symbol: NWMN_0568
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 650668..651030
- length: 363
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5330308 NCBI
- RefSeq: YP_001331602 NCBI
- BioCyc:
- MicrobesOnline: 3706115 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361GTGGAGACATTGCTTTGTGAAACTGAAAATATTAATAAGAATCCCAAATATAGAATTATC
AAATACAAAGATGAATATTTGATGATTGATTTAGTAAGTATATGGTTAGCACTCTTTTTC
CCAATGATTAATTGGCTGATTCCAAAAAAGTACGTCAAAATCAGCGAAAAAGATTTTGAA
ACTTTAAACATTGTGAAGACAGCTAAAATCAATTCTTTTTGGCCAGTGGCAGGAAGTACG
GTCTTATTTGGTGTTATGTTAAGAAGGTATTCCCATTTATTTATCGTTAAATATGAATAT
AGTATAGTAATTTTAATTTGTTGCATCATAATACTAGGTATTTTTCTGTTTTTTTATATT
TAA60
120
180
240
300
360
363
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_0568
- symbol: NWMN_0568
- description: hypothetical protein
- length: 120
- theoretical pI: 9.07199
- theoretical MW: 14318.2
- GRAVY: 0.611667
⊟Function[edit | edit source]
- TIGRFAM: tandem five-TM protein (TIGR01218; HMM-score: 95.5)
- TheSEED: data available for N315
- PFAM: no clan defined DUF443; Protein of unknown function (DUF443) (PF04276; HMM-score: 118.1)and 1 moreDUF5357; Family of unknown function (DUF5357) (PF17310; HMM-score: 14.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 3
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001857
- TAT(Tat/SPI): 0.000103
- LIPO(Sec/SPII): 0.000341
- predicted transmembrane helices (TMHMM): 3
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- METLLCETENINKNPKYRIIKYKDEYLMIDLVSIWLALFFPMINWLIPKKYVKISEKDFETLNIVKTAKINSFWPVAGSTVLFGVMLRRYSHLFIVKYEYSIVILICCIIILGIFLFFYI
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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