From AureoWiki
Jump to navigation Jump to search

NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0834 [new locus tag: NWMN_RS04705 ]
  • pan locus tag?: SAUPAN003072000
  • symbol: NWMN_0834
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0834 [new locus tag: NWMN_RS04705 ]
  • symbol: NWMN_0834
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 923300..923875
  • length: 576
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    TTGTCGTTTCATCAAGTAGAAGAATGGTTTGAGATATTTCGACAGTTTGGTTATTTACCT
    GGATTTATATTGTTATATATTAGAGCTATAATTCCAGTATTTCCTTTAGCACTCTATATT
    TTAATTAACATTCAAGCTTATGGACCTATTTTAGGTATATTGATTAGTTGGCTTGGATTA
    ATTTCTGGAACATTTACAGTCTATTTGATCTGTAAACGATTGGTGAACACTGAGAGGATG
    CAGCGAATTAAACAACGTACTGCTGTTCAACGCTTGATTAGTTTTATTGATCGCCAAGGA
    TTAATCCCATTGTTTATTTTACTTTGTTTTCCTTTTACGCCAAATACATTAATAAATTTT
    GTAGCGAGTCTATCTCATATTAGACCTAAATATTATTTCATTGTTTTGGCATCATCAAAG
    TTAGTTTCAACAATTATTTTAGGTTATTTAGGTAAGGAAATTACTACAATTTTAACGCAT
    CCTTTAAGAGGGATATTAATGTTAGTTGTGTTGGTTGTATTTTGGATTGTTGGAAAAAAG
    TTAGAACAGCATTTTATGGGATCGAAAAAGGAGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    576

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_0834 [new locus tag: NWMN_RS04705 ]
  • symbol: NWMN_0834
  • description: hypothetical protein
  • length: 191
  • theoretical pI: 10.4082
  • theoretical MW: 22077.6
  • GRAVY: 0.740838

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    no clan defined SNARE_assoc; SNARE associated Golgi protein (PF09335; HMM-score: 56.9)
    and 1 more
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase (PF16192; HMM-score: 13.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.000821
    • TAT(Tat/SPI): 0.000108
    • LIPO(Sec/SPII): 0.004293
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSFHQVEEWFEIFRQFGYLPGFILLYIRAIIPVFPLALYILINIQAYGPILGILISWLGLISGTFTVYLICKRLVNTERMQRIKQRTAVQRLISFIDRQGLIPLFILLCFPFTPNTLINFVASLSHIRPKYYFIVLASSKLVSTIILGYLGKEITTILTHPLRGILMLVVLVVFWIVGKKLEQHFMGSKKE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=NWMN_0834&oldid=58443"