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Pangenome04-0298108BA0217611819-97685071193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

NCBI: 06-JUL-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1036 [new locus tag: NWMN_RS05865 ]
  • pan locus tag?: SAUPAN001703000
  • symbol: NWMN_1036
  • pan gene symbol?:
  • synonym:
  • product: phage tail fiber

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1036 [new locus tag: NWMN_RS05865 ]
  • symbol: NWMN_1036
  • product: phage tail fiber
  • replicon: chromosome
  • strand: +
  • coordinates: 1137855..1139027
  • length: 1173
  • essential: unknown

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGTACAAAATAAAAGATGTTGAAACGAGAATAAAAAATGATGGTGTTGACTTAGGTGAC
    ATTGGCTGTCGATTTTACACTGAAGATGAAAATACAGCATCTATAAGAATAGGTATCAAT
    GACAAACAAGGTCGTATCGATCTAAAAGCACATGGCTTAACACCTAGATTACATTTGTTT
    ATGGAAGATGGCTCTATATTCAAAAATGAGCCCCTTATTATCGACGATGTTGTAAAAGGG
    TTCCTTACCTACAAGATACCTAAAAAGGTTATCAAACACGCTGGTTATGTTCGTTGTAAG
    CTGTTTTTAGAGAAAGAAGAAGAAAAAATACATGTCGCGAACTTTTCTTTCAATATCGTT
    GATAGTGGCATTGAATCTGCTGTAGCAAAAGAAATCGATGTTAAATTGGTAGATGATGCT
    ATTACGAGAATCTTAAAAGATAACGCGACAGATTTATTGAGCAAAGACTTTAAAGAGAAA
    ATAGATAAAGATGTCATTTCTTACATTGAAAAGAATGAAAGTAGATTTAAAGGTGTGAAA
    GGTGATAAAGGCGAACCGGGACAACCTGGTGCAAAAGGTGAGACAGGTAAAAAAGGAGAA
    CAAGGCGCACCCGGTAAAAACGGTACTGTAGTATCAATCAATCCTGACACTAAAATGTGG
    CAAATTGATGGTAAAGATACAGATATCAAAGCAGAACCTGAGATATTGGACAAAATCAAT
    ATCGCAAATGTTGAAGGGTTAGAAAATAAATTGCAAGAAGTTGAAAAAATCAAAGATACA
    ACTCTCAACGACTCTAAAACGTATACGGATTCAAAAATTGCTGAACTAGTTGATAGCGCG
    CCTGAATCTATGAATACATTAAGAGAATTAGCAGAAGCAATACAAAACAACTCTATTTCA
    GAAAGTGTATTGCAACAGATTGGCTCAAAAGTTAGTACAGAAGATTTTGAGAAATTCAAA
    CAAACACTAAATGATTTATATGCTCCAAAAAATCATAATCATGACGAGCGGTATGTTTTG
    TCATCTCAAGCTTTTACTAAACAACAAGCGGATAATTTATATCAACTAAAAAGCGCATCT
    CAACCGACGGTTAAAATTTGGACAGGAACAGAAAATGAATATAACTATATATATCAAAAA
    GACCCGAATACGTTGTATTTAATTAAAGGGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1173

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_1036 [new locus tag: NWMN_RS05865 ]
  • symbol: NWMN_1036
  • description: phage tail fiber
  • length: 390
  • theoretical pI: 5.17785
  • theoretical MW: 43873.2
  • GRAVY: -0.671795

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED:  
    Phages, Prophages, Transposable elements, Plasmids Phages, Prophages Phage tail fiber proteins  Tail fiber protein [SA bacteriophages 11, Mu50B]
  • PFAM:
    no clan defined DUF2479; Domain of unknown function (DUF2479) (PF10651; HMM-score: 112.5)
    and 4 more
    Collagen; Collagen triple helix repeat (20 copies) (PF01391; HMM-score: 25.7)
    PBP_dimer; Penicillin-binding Protein dimerisation domain (PF03717; HMM-score: 14.4)
    RNase_H (CL0219) RNase_HII; Ribonuclease HII (PF01351; HMM-score: 9.6)
    C1q_TNF (CL0100) DUF1860; Domain of unknown function (DUF1860) (PF08949; HMM-score: 7.3)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006029
    • TAT(Tat/SPI): 0.000458
    • LIPO(Sec/SPII): 0.001929
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MYKIKDVETRIKNDGVDLGDIGCRFYTEDENTASIRIGINDKQGRIDLKAHGLTPRLHLFMEDGSIFKNEPLIIDDVVKGFLTYKIPKKVIKHAGYVRCKLFLEKEEEKIHVANFSFNIVDSGIESAVAKEIDVKLVDDAITRILKDNATDLLSKDFKEKIDKDVISYIEKNESRFKGVKGDKGEPGQPGAKGETGKKGEQGAPGKNGTVVSINPDTKMWQIDGKDTDIKAEPEILDKINIANVEGLENKLQEVEKIKDTTLNDSKTYTDSKIAELVDSAPESMNTLRELAEAIQNNSISESVLQQIGSKVSTEDFEKFKQTLNDLYAPKNHNHDERYVLSSQAFTKQQADNLYQLKSASQPTVKIWTGTENEYNYIYQKDPNTLYLIKG

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]