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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1083
- pan locus tag?: SAUPAN003437000
- symbol: NWMN_1083
- pan gene symbol?: —
- synonym:
- product: DNA-binding protein
⊟Additional information (user-provided)[edit | edit source]
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1083
- symbol: NWMN_1083
- product: DNA-binding protein
- replicon: chromosome
- strand: +
- coordinates: 1187401..1187496
- length: 96
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5331890 NCBI
- RefSeq: YP_001332117 NCBI
- BioCyc:
- MicrobesOnline: 3706634 MicrobesOnline
⊟Phenotype[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟DNA sequence[edit | edit source]
- 1
61ATGAGAAAAAATGAAAGATCATTAGACAATATGTCATTGAAAAACGCTGAACTACTTTAT
AAATTTGCCAATAGTATATTTAGCAATGAAAATTAA60
96
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1083
- symbol: NWMN_1083
- description: DNA-binding protein
- length: 31
- theoretical pI: 9.21883
- theoretical MW: 3678.13
- GRAVY: -0.887097
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.4485
- Cytoplasmic Membrane Score: 0.0108
- Cell wall & surface Score: 0
- Extracellular Score: 0.5407
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.222319
- TAT(Tat/SPI): 0.023541
- LIPO(Sec/SPII): 0.045613
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Protein sequence[edit | edit source]
- MRKNERSLDNMSLKNAELLYKFANSIFSNEN
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization: data available for COL
- quantitative data / protein copy number per cell: data available for COL
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Additional information (user-provided)[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Other information (user-provided)[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]