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NCBI: 06-JUL-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1324 [new locus tag: NWMN_RS07450 ]
  • pan locus tag?: SAUPAN003829000
  • symbol: NWMN_1324
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1324 [new locus tag: NWMN_RS07450 ]
  • symbol: NWMN_1324
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1454484..1455293
  • length: 810
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGTGTGGACTTAGAAGTATAACATTAGGTACAACAAATATAGAACAGACAAAACATTTC
    ATGGTTGACATATTAGGATTAAATTATGAAGAACTTCTTGAAAACTCAATTCGTTTCGGC
    GATGCAGATATAAGCCCAGGAACAAGACTTCAATTTATACAAGTTCCAAGTGAGCAATTA
    GAAGAATCTCACTTTGTGGGTATTGGATTACGTACACCAACTGACTCAGGTTTAGAGGAG
    TATGCGGAAATATTATCGAATAAGGATATTCCATTTACAACAGTTAAAGAATTAAATGGC
    AATAAATATTTCAGTCTCGAAGATAACAATGGTCATATTTTCTCAATATATTCAAACGAG
    AATAATTATGGCGTTGGTTTAGGTATGCCTTCTTTTGAGAGTGCGGTCAATCCGTTACAT
    CAAGTGCAAGGTTTAGGACCAGTGATTCTTAAAGTGAATCATGTAGATATTACAGGTCAA
    ATTTTAACAAATATATTCGGACTTGAAGTATTTGCAGAATACCAACCCTTCGACAATGCT
    GACTATCATGTCCAAGTATTCAAAGTTGGAACGGGTGGTCTAGGTGGCGAAATACATTTA
    ATGCCTGTAGAAACCGAAATGACAATGCCGGAATATGGCGCAGTCGATCAAGTTGAGTTT
    GAAACGAAAGATGCAGATTTCTTTAATCAAGCGAAATCGCGCTTAGATGAAGTGGAAATA
    CCATATCAAACGCTTGAGCAAGATGATATTGAATCAATTAGAATTACTGAAAACAGTGGA
    TTATCGTTTATATTCACTTTACAAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    810

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_1324 [new locus tag: NWMN_RS07450 ]
  • symbol: NWMN_1324
  • description: hypothetical protein
  • length: 269
  • theoretical pI: 4.08
  • theoretical MW: 30084.4
  • GRAVY: -0.235316

Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Other 2,3-dihydroxybiphenyl 1,2-dioxygenase (TIGR03213; EC 1.13.11.39; HMM-score: 17)
    and 1 more
    3,4-dihydroxyphenylacetate 2,3-dioxygenase (TIGR02295; EC 1.13.11.15; HMM-score: 12.4)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    Glyoxalase (CL0104) Glyoxalase; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily (PF00903; HMM-score: 19.1)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002877
    • TAT(Tat/SPI): 0.000172
    • LIPO(Sec/SPII): 0.000312
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MCGLRSITLGTTNIEQTKHFMVDILGLNYEELLENSIRFGDADISPGTRLQFIQVPSEQLEESHFVGIGLRTPTDSGLEEYAEILSNKDIPFTTVKELNGNKYFSLEDNNGHIFSIYSNENNYGVGLGMPSFESAVNPLHQVQGLGPVILKVNHVDITGQILTNIFGLEVFAEYQPFDNADYHVQVFKVGTGGLGGEIHLMPVETEMTMPEYGAVDQVEFETKDADFFNQAKSRLDEVEIPYQTLEQDDIESIRITENSGLSFIFTLQK

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]