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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1636 [new locus tag: NWMN_RS09190 ]
- pan locus tag?: SAUPAN004410000
- symbol: NWMN_1636
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1636 [new locus tag: NWMN_RS09190 ]
- symbol: NWMN_1636
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1824429..1825286
- length: 858
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5330960 NCBI
- RefSeq: YP_001332670 NCBI
- BioCyc:
- MicrobesOnline: 3707188 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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841ATGAATACCTTTCAAATGAGAGATAAATTAAAGGAACGTTTAAGCCATTTAGACGTTGAT
TTTAAATTTAATCGTGAAGAAGAAACTTTGCGTATTTATCGAACAGATAATAACAAAGGT
ATCACGATTAAACTTAACGCTATAGTCGCAAAATATGAAGATAAAAAAGAAAAAATTGTA
GATGAAATTGTTTATTACGTTGATGAAGCTATTGCACAAATGGCAGATAAAACCCTTGAG
AGTATATCATCTAGTCAAATTATGCCTGTCATTAGAGCGACTAGCTTTGATAAAAAAACT
AAACAAGGTGTTCCTTTTATCTATGATGAGCATACTGCAGAAACAGCAGTTTATTATGCA
GTCGATTTAGGGAAATCATATCGTCTAATTGACGAAAGCATGTTAGAGGATTTGAAGTTA
ACTGAACAACAAATAAGAGAAATGTCTCTGTTTAATGTTAGAAAATTGTCAAATTCATAT
ACGACTGATGAAGTAAAAGGTAATATTTTTTATTTTATTAACTCAAATGACGGGTATGAT
GCAAGTAGGATACTAAATACTGCATTTTTAAATGAAATTGAGGCACAATGTCAAGGCGAA
ATGCTCGTAGCAGTGCCACACCAAGATGTGTTAATTATTGCAGATATACGCAATAAAACA
GGATATGATGTGATGGCACATTTAACAATGGAATTTTTCACTAAAGGTCTAGTTCCAATT
ACATCATTATCCTTTGGATATAAACAGGGTCATCTTGAACCGATATTTATTTTAGGTAAA
AATAATAAACAAAAAAGAGATCCAAACGTGATTCAGCGTTTAGAAGCAAATCGTCGTAAA
TTTAATAAAGATAAATAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1636 [new locus tag: NWMN_RS09190 ]
- symbol: NWMN_1636
- description: hypothetical protein
- length: 285
- theoretical pI: 6.69608
- theoretical MW: 33069.5
- GRAVY: -0.494035
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM: no clan defined DUF1444; Protein of unknown function (DUF1444) (PF07285; HMM-score: 418.7)and 1 moreIL17R_D_N; N-terminus of interleukin 17 receptor D (PF16742; HMM-score: 13.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002135
- TAT(Tat/SPI): 0.000218
- LIPO(Sec/SPII): 0.000408
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNTFQMRDKLKERLSHLDVDFKFNREEETLRIYRTDNNKGITIKLNAIVAKYEDKKEKIVDEIVYYVDEAIAQMADKTLESISSSQIMPVIRATSFDKKTKQGVPFIYDEHTAETAVYYAVDLGKSYRLIDESMLEDLKLTEQQIREMSLFNVRKLSNSYTTDEVKGNIFYFINSNDGYDASRILNTAFLNEIEAQCQGEMLVAVPHQDVLIIADIRNKTGYDVMAHLTMEFFTKGLVPITSLSFGYKQGHLEPIFILGKNNKQKRDPNVIQRLEANRRKFNKDK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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