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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1656 [new locus tag: NWMN_RS09295 ]
  • pan locus tag?: SAUPAN004450000
  • symbol: NWMN_1656
  • pan gene symbol?: —
  • synonym:
  • product: putative transposase for IS1272

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1656 [new locus tag: NWMN_RS09295 ]
  • symbol: NWMN_1656
  • product: putative transposase for IS1272
  • replicon: chromosome
  • strand: -
  • coordinates: 1852428..1852919
  • length: 492
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGTATAAAAATTATAACATGACCCCAACTTACACTACCAATAGAAACTTCGTTAGAATT
    CCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGATACCTGATAGCGAA
    TTCGATGAATTCAGACATCATCGTGGTGCAACATCCTATCATCCAAAAATGATGTTAAAA
    ATCATCTTATATGCATATACTCAATCTGTATTTTCTGGTCGTAGAATAGAGAAATTACTT
    CATGACAGTATTCGAATGATGTGGTTAGCCCAAGATCAAACACTTTCTTATAAAACTATT
    AATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTC
    TATAGTCAATGTTTAAAGCAAAATCTTATTGATGATAATTCAATTTTTATTGATGGTACA
    AAAGTAGAAGCTAGTGCCAATAGATATACATTGGTGCGGAAGAAAGTATTCAAAATCACG
    AATCGAAATTGA
    60
    120
    180
    240
    300
    360
    420
    480
    492

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_1656 [new locus tag: NWMN_RS09295 ]
  • symbol: NWMN_1656
  • description: putative transposase for IS1272
  • length: 163
  • theoretical pI: 9.90844
  • theoretical MW: 19436.1
  • GRAVY: -0.539877

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for NCTC8325
  • PFAM:
    no clan defined DUF772; Transposase domain (DUF772) (PF05598; HMM-score: 57.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011852
    • TAT(Tat/SPI): 0.000322
    • LIPO(Sec/SPII): 0.0008
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MYKNYNMTPTYTTNRNFVRIPQNDISRYVNEIVETIPDSEFDEFRHHRGATSYHPKMMLKIILYAYTQSVFSGRRIEKLLHDSIRMMWLAQDQTLSYKTINRFRVNPNTDALIESLFIQFYSQCLKQNLIDDNSIFIDGTKVEASANRYTLVRKKVFKITNRN

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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