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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1688
- pan locus tag?: SAUPAN004513000
- symbol: NWMN_1688
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1688
- symbol: NWMN_1688
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1883505..1883957
- length: 453
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 5331000 NCBI
- RefSeq: YP_001332722 NCBI
- BioCyc:
- MicrobesOnline: 3707240 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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421ATGAAAATAACATATAAATATAGAGGAGATTTACCTTTGAATACAGAGAACAACAAGAAT
CAAAACCAATCTGTTAAAAATTCTGAAAGACGCGGCATGTTAAAAGGATGCGGCGGTTGC
CTTATTTCTTTTATTTTATTAATAATCTTATTATCAGCCTGTTCAATGATGTTTAGTAAT
AATGACAATTCCACTAATAATCAATCATCAAAAACGCAATTAACTCAAAAAGATGAAAAT
AAAAATGAAGATAAGCCTGAGGAAAAATCAGAAACAGCAACAGATGAGGATTTACAATCA
ACCGAAGAAGTACCTGCAAATGAAAATACTGAAAATAATCAACATGAAATTGATGAAATA
ACAACAAAAGATCAATCAGACGATGATATTAACACACCAAACGTTGCAGAAGATAAATCA
CAAGACGACTTGAAAGATGATTTAAAAGAATAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1688
- symbol: NWMN_1688
- description: hypothetical protein
- length: 150
- theoretical pI: 4.12325
- theoretical MW: 16965.3
- GRAVY: -1.26
⊟Function[edit | edit source]
- TIGRFAM: TIGR03943 family protein (TIGR03943; HMM-score: 14.9)Transport and binding proteins Nucleosides, purines and pyrimidines nucleoside Transporter (TIGR00939; HMM-score: 14.1)Cellular processes Sporulation and germination stage III sporulation protein AG (TIGR02830; HMM-score: 14.1)Cellular processes Pathogenesis type III secretion protein, HrcV family (TIGR01399; HMM-score: 13.8)Protein fate Protein and peptide secretion and trafficking type III secretion protein, HrcV family (TIGR01399; HMM-score: 13.8)Cellular processes Cell division cell division protein FtsL (TIGR02209; HMM-score: 13.3)and 6 moreCellular processes Sporulation and germination stage III sporulation protein AF (TIGR02896; HMM-score: 10.5)Transport and binding proteins Other pleiotropic drug resistance family protein (TIGR00956; HMM-score: 8.8)Cellular processes Sporulation and germination sporulation lipoprotein, YhcN/YlaJ family (TIGR02898; HMM-score: 7.2)mycoides cluster lipoprotein, LppA/P72 family (TIGR03490; HMM-score: 5.6)Protein fate Protein and peptide secretion and trafficking type VII secretion protein EssA (TIGR03927; HMM-score: 4.6)Biosynthesis of cofactors, prosthetic groups, and carriers Heme, porphyrin, and cobalamin cobaltochelatase, CobT subunit (TIGR01651; EC 6.6.1.2; HMM-score: 3.4)
- TheSEED:
- PFAM: no clan defined DUF1510; Protein of unknown function (DUF1510) (PF07423; HMM-score: 20.5)CRA; Circumsporozoite-related antigen (CRA) (PF06589; HMM-score: 19.4)DMT (CL0184) Zip; ZIP Zinc transporter (PF02535; HMM-score: 17.5)no clan defined DUF4692; Domain of unknown function (DUF4692) (PF15763; HMM-score: 17)GPCR_A (CL0192) SID-1_RNA_chan; dsRNA-gated channel SID-1 (PF13965; HMM-score: 16.9)O-anti_assembly (CL0499) O-antigen_lig; O-antigen ligase like membrane protein (PF13425; HMM-score: 16.5)and 20 moreno clan defined TMEM51; Transmembrane protein 51 (PF15345; HMM-score: 15.9)SARAF; SOCE-associated regulatory factor of calcium homoeostasis (PF06682; HMM-score: 15.7)Piezo_RRas_bdg; Piezo non-specific cation channel, R-Ras-binding domain (PF12166; HMM-score: 14.3)MAP17; Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 (PF15807; HMM-score: 12.7)Serinc; Serine incorporator (Serinc) (PF03348; HMM-score: 12.3)G0-G1_switch_2; G0/G1 switch protein 2 (PF15103; HMM-score: 11.9)FAM176; FAM176 family (PF14851; HMM-score: 11.7)V_ATPase_I; V-type ATPase 116kDa subunit family (PF01496; HMM-score: 11.4)DUF4834; Domain of unknown function (DUF4834) (PF16118; HMM-score: 10.9)CLN3; CLN3 protein (PF02487; HMM-score: 10.4)DMT (CL0184) CSG2; Ceramide synthase regulator (PF16965; HMM-score: 10)no clan defined TRAP_alpha; Translocon-associated protein (TRAP), alpha subunit (PF03896; HMM-score: 9.7)DUF4820; Domain of unknown function (DUF4820) (PF16091; HMM-score: 9.7)Viral_ssRNA_CP (CL0055) TT_ORF1; TT viral orf 1 (PF02956; HMM-score: 9.5)Peptidase_AD (CL0130) Presenilin; Presenilin (PF01080; HMM-score: 9.3)DMT (CL0184) Ureide_permease; Ureide permease (PF07168; HMM-score: 9.1)APC (CL0062) HCO3_cotransp; HCO3- transporter family (PF00955; HMM-score: 8.8)NPR (CL0435) NPR3; Nitrogen Permease regulator of amino acid transport activity 3 (PF03666; HMM-score: 8.6)MFS (CL0015) Folate_carrier; Reduced folate carrier (PF01770; HMM-score: 8.1)FUSC (CL0307) ALMT; Aluminium activated malate transporter (PF11744; HMM-score: 5.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helix: 1
- LocateP: Lipid anchored
- Prediction by SwissProt Classification: Extracellular
- Pathway Prediction: Sec-(SPII)
- Intracellular possibility: 0.17
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: LLSACSM
- SignalP: Signal peptide LIPO(Sec/SPII) length 53 aa
- SP(Sec/SPI): 0.043276
- TAT(Tat/SPI): 0.0134
- LIPO(Sec/SPII): 0.689809
- Cleavage Site: CS pos: 53-54. LSA-CS. Pr: 0.6043
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKITYKYRGDLPLNTENNKNQNQSVKNSERRGMLKGCGGCLISFILLIILLSACSMMFSNNDNSTNNQSSKTQLTQKDENKNEDKPEEKSETATDEDLQSTEEVPANENTENNQHEIDEITTKDQSDDDINTPNVAEDKSQDDLKDDLKE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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