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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1800 [new locus tag: NWMN_RS10310 ]
- pan locus tag?: SAUPAN001511000
- symbol: NWMN_1800
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1800 [new locus tag: NWMN_RS10310 ]
- symbol: NWMN_1800
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2010098..2010346
- length: 249
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5331087 NCBI
- RefSeq: YP_001332834 NCBI
- BioCyc:
- MicrobesOnline: 3707388 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241ATGACCATGACAGATAACGCGCGTAAAGAATACTTAAACCAATTTTTCGGCTCTAAGAGA
TATCTGTATCAGGATAACGAGCGAGTGGCACATATCCATGTAGTGAATGGCGCTTATTAC
TTTCACGGGCATATCGTACCAGATTGGCAAGGTGTGAAAAAGACATTTGATACAGCGGAA
GAGCTCGGAATATATATAAAGCAACATGGTTTGGAATACGAGGAACAGAAGCAACTAACT
TTATTTTAG60
120
180
240
249
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1800 [new locus tag: NWMN_RS10310 ]
- symbol: NWMN_1800
- description: hypothetical protein
- length: 82
- theoretical pI: 6.67996
- theoretical MW: 9800.93
- GRAVY: -0.706098
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL, NCTC8325, USA300_FPR3757
- PFAM: no clan defined Phage_Orf51; Phage Conserved Open Reading Frame 51 (PF06194; HMM-score: 181.2)and 1 morePeptidase_CA (CL0125) Guanylate_cyc_2; Guanylylate cyclase (PF09778; HMM-score: 12)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005272
- TAT(Tat/SPI): 0.000211
- LIPO(Sec/SPII): 0.000393
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTMTDNARKEYLNQFFGSKRYLYQDNERVAHIHVVNGAYYFHGHIVPDWQGVKKTFDTAEELGIYIKQHGLEYEEQKQLTLF
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.