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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_2226 [new locus tag: NWMN_RS12835 ]
  • pan locus tag?: SAUPAN005806000
  • symbol: NWMN_2226
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_2226 [new locus tag: NWMN_RS12835 ]
  • symbol: NWMN_2226
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2447225..2447731
  • length: 507
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    GTGGCAAAATTTAATGTAGAGAATGAACATGTCGAAGTTGAAATTGAAAAGCTTTATAAA
    TTTTCTCCAGAGTTAGTATACGAAGCTTGGACAAAGAAAGATTTGTTGAAACAATGGTTT
    ATGACATCAGCCAGAACGAATAAAGAGATTGAAGCGGACGTTAAAGAAGGCGGTAAATAT
    CGTATTGTAGATCAACAACGTAATGGCAAAGTAAATGTGATTGAAGGCATTTATGAATCT
    TTAGTTATGGATGAATACGTTAAGATGACTATCGGTATGCCTGGACTAAGTGAAACGCAA
    GATGTCATTGAGGTAGAATTTTTTGAACGTGAAACAGGTGGCACCCAAATGCTATTTTAT
    TATCGTTCATTAGTTGAAAAAGAAAGACGATTTACTAATTTAGAATACAAGCAAAAGAAA
    AAAGAATATCATGATGCCATGGTGCATGGTTTCGAATTGATGTTTGATAAGATGTACCAC
    GTTATCGAAACATCAACACAACAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    507


⊟Protein[edit | edit source]

Protein Data Bank: 2IL5

⊟General[edit | edit source]

  • locus tag: NWMN_2226 [new locus tag: NWMN_RS12835 ]
  • symbol: NWMN_2226
  • description: hypothetical protein
  • length: 168
  • theoretical pI: 5.01663
  • theoretical MW: 20082.8
  • GRAVY: -0.67381

⊟Function[edit | edit source]

  • TIGRFAM:
    Hypothetical proteins Conserved Gemmata obscuriglobus paralogous family TIGR03066 (TIGR03066; HMM-score: 17.7)
  • TheSEED  :
    • Hypothetical protein SAV2325
  • PFAM:
    Bet_v_1_like (CL0209) AHSA1; Activator of Hsp90 ATPase homolog 1-like protein (PF08327; HMM-score: 79.2)
    and 2 more
    no clan defined DUF3212; Protein of unknown function (DUF3212) (PF11486; HMM-score: 18.9)
    YfbU; YfbU domain (PF03887; HMM-score: 15.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9887
    • Cytoplasmic Membrane Score: 0.009
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0023
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003562
    • TAT(Tat/SPI): 0.000404
    • LIPO(Sec/SPII): 0.000414
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MAKFNVENEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVMDEYVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIETSTQQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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