From AureoWiki
Jump to navigation Jump to search

NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_2235 [new locus tag: NWMN_RS12880 ]
  • pan locus tag?: SAUPAN005822000
  • symbol: hutG
  • pan gene symbol?: hutG
  • synonym:
  • product: formimidoylglutamase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_2235 [new locus tag: NWMN_RS12880 ]
  • symbol: hutG
  • product: formimidoylglutamase
  • replicon: chromosome
  • strand: -
  • coordinates: 2458042..2458977
  • length: 936
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    GTGTACAAGCAAGGTGAACCAAATTTATGGACTGGAAGGTTAGATAGTGAAACAGACCCG
    AAAAAATTTAGACATTTTCAAACAGTAACATTTGAAGATTTGTCTAAGCTGGAAAAGAGT
    AGTATGCCATCAGGGGTCGGTATATTAGGCTATGCTGTTGACAAAGGTGTTGCTTTAAAC
    AAGGGGCGCATTGGTGCAAAAGAAGGACCAGATGCGATTAAACAAGCATTTGCAGGTTTG
    CCGGATTTGAATCAATGTGAAACTTTAGTCGATTACGGAAATGTTTATCATGATCATGAG
    GAATTAATTGATACTCAAAAAGAATTTGCTATGCTTGCAGCGAAGTCAATTGCTAATCAT
    AGACAAACATTTTTATTAGGTGGTGGACATGATATTGCGTATGCTCAATATTTAGCAACA
    CGTAAAGTCTATCCAACACAATCTATTGGTGTGATAAATATTGATGCGCATTTTGATACA
    CGTGCTGAACAACAATCTACATCTGGAACGAGCTTTAGACAAATTTTAGAAGAAGATGAA
    AACACAGATTATTTAGTGCTTGGTATTGCTCAAGGTGGTAATACGCAAAGTTTATTTGAT
    TATGCTAAAGAGAAAAAGATTGATTATGTCTTTGCAGATGAATTATTGAGTCACGTATCA
    CCAACAATTAAAGATATGATTGAACGTTTTGTACATGAACATGATGTCATTATGTTTACG
    ATTTGTATGGATGTCATTGATAGTGCGTTTGCGCCTGGGGTAAGTGCGCCGGCAGTGTTA
    GGTTTGTATCCACATACTGTTCTTGAATTAGCAAAACGTATTATTCCAAGTGATAAGGTG
    TCTTCAGTTAGTATTGCTGAGATGAATCCAACATATGACGCTGACAATAGAACTGCTAAG
    CTCGTTGCTAATTTAGTGCATCATTTTTTAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    936

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_2235 [new locus tag: NWMN_RS12880 ]
  • symbol: HutG
  • description: formimidoylglutamase
  • length: 311
  • theoretical pI: 5.35965
  • theoretical MW: 34512.8
  • GRAVY: -0.262379

⊟Function[edit | edit source]

  • reaction:
    EC 3.5.3.8?  ExPASy
    Formimidoylglutamase N-formimidoyl-L-glutamate + H2O = L-glutamate + formamide
  • TIGRFAM:
    Metabolism Energy metabolism Amino acids and amines formimidoylglutamase (TIGR01227; EC 3.5.3.8; HMM-score: 442.6)
    and 3 more
    agmatinase (TIGR01230; EC 3.5.3.11; HMM-score: 83.5)
    arginase (TIGR01229; EC 3.5.3.1; HMM-score: 62)
    pseudaminic acid biosynthesis-associated methylase (TIGR03587; HMM-score: 13.7)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    Arginase (CL0302) Arginase; Arginase family (PF00491; HMM-score: 164.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: Mn2+
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006721
    • TAT(Tat/SPI): 0.004175
    • LIPO(Sec/SPII): 0.000839
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MYKQGEPNLWTGRLDSETDPKKFRHFQTVTFEDLSKLEKSSMPSGVGILGYAVDKGVALNKGRIGAKEGPDAIKQAFAGLPDLNQCETLVDYGNVYHDHEELIDTQKEFAMLAAKSIANHRQTFLLGGGHDIAYAQYLATRKVYPTQSIGVINIDAHFDTRAEQQSTSGTSFRQILEEDENTDYLVLGIAQGGNTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFVHEHDVIMFTICMDVIDSAFAPGVSAPAVLGLYPHTVLELAKRIIPSDKVSSVSIAEMNPTYDADNRTAKLVANLVHHFLK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: SigB (activation) regulon
    SigB(sigma factor)controlling a large regulon involved in stress/starvation response and adaptation;  [1] [2]   other strains

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Markus Bischoff, Paul Dunman, Jan Kormanec, Daphne Macapagal, Ellen Murphy, William Mounts, Brigitte Berger-Bächi, Steven Projan
    Microarray-based analysis of the Staphylococcus aureus sigmaB regulon.
    J Bacteriol: 2004, 186(13);4085-99
    [PubMed:15205410] [WorldCat.org] [DOI] (P p)
  2. ↑ Bettina Schulthess, Dominik A Bloes, Patrice François, Myriam Girard, Jacques Schrenzel, Markus Bischoff, Brigitte Berger-Bächi
    The σB-dependent yabJ-spoVG operon is involved in the regulation of extracellular nuclease, lipase, and protease expression in Staphylococcus aureus.
    J Bacteriol: 2011, 193(18);4954-62
    [PubMed:21725011] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=NWMN_2235&oldid=71047"