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NCBI: 06-JUL-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_2243 [new locus tag: NWMN_RS12925 ]
  • pan locus tag?: SAUPAN005837000
  • symbol: NWMN_2243
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_2243 [new locus tag: NWMN_RS12925 ]
  • symbol: NWMN_2243
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2466289..2466936
  • length: 648
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGGAACAATTACCTCAAGTAGGTTTTATGAAATCATTCGTTTTATTTTGGAAAAATTAT
    GTAAATTTTAAGGGGAGATCAAGACGTAGTGAATATTGGTATATGGCACTATGGCATTTG
    ATACTTATGGTTCCAGCTGTGTGTGTGCTAATAATAAACCTATTTCTATTCTTTATTTCT
    ATAGCGGCGGATAACGAAACATTAATAGTTATGAGTATATTGATGATTATCCTTACATCT
    GTGTATACTTTTGTCTATAGTTTGGCAACGTTTATTCCAAATTTAGCGTTGTGCGTTCGA
    AGATTTCACGATATATCAAGAACAATGTTATTTCCAATGATTATGACAGTATTCAGTATT
    ATATTTTATATAGTATTACAGATTATCGATAGTTATTATGACAGTGATTTTACATTAATG
    CCGATGGGTCTTAATATTTTGTTAGTACTTCTTTATTTTGTTTATTTAGGCCTAACAATT
    GTTATGATAGTATTCCTATGCTTTGACAGTAAGCCGGCAAATAAATATGGCGAAAGCCCA
    AAATACCCGTCTACAATTAAAAATCAACCAGTGACATCTGAAACACCGGAAAAAGCGTGT
    ACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    648

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_2243 [new locus tag: NWMN_RS12925 ]
  • symbol: NWMN_2243
  • description: hypothetical protein
  • length: 215
  • theoretical pI: 6.50253
  • theoretical MW: 24956.6
  • GRAVY: 0.573023

Function[edit | edit source]

  • TIGRFAM:
    non-ribosomal peptide synthetase terminal domain of unknown function (TIGR02353; HMM-score: 4.8)
  • TheSEED:  
    FIG01108220: hypothetical protein
  • PFAM:
    no clan defined DUF805; Protein of unknown function (DUF805) (PF05656; HMM-score: 67.3)
    and 1 more
    OAD_gamma; Oxaloacetate decarboxylase, gamma chain (PF04277; HMM-score: 10.3)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001665
    • TAT(Tat/SPI): 0.000137
    • LIPO(Sec/SPII): 0.002241
  • predicted transmembrane helices (TMHMM): 4

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MEQLPQVGFMKSFVLFWKNYVNFKGRSRRSEYWYMALWHLILMVPAVCVLIINLFLFFISIAADNETLIVMSILMIILTSVYTFVYSLATFIPNLALCVRRFHDISRTMLFPMIMTVFSIIFYIVLQIIDSYYDSDFTLMPMGLNILLVLLYFVYLGLTIVMIVFLCFDSKPANKYGESPKYPSTIKNQPVTSETPEKACTSETPKTPEETDNQL

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

  • NWMN_2243 no polycistronic organisation predicted

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]