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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_2398
- pan locus tag?: SAUPAN006124000
- symbol: NWMN_2398
- pan gene symbol?: —
- synonym:
- product: C-terminal part of fibronectin binding protein A
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_2398
- symbol: NWMN_2398
- product: C-terminal part of fibronectin binding protein A
- replicon: chromosome
- strand: -
- coordinates: 2638828..2639214
- length: 387
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 5331918 NCBI
- RefSeq: YP_001333432 NCBI
- BioCyc:
- MicrobesOnline: 3708000 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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361GTGCCACCAACGCCACCGACACCAGAAGTACCAAGCGAGCCGGAAACACCAACACCACCG
ACACCAGAAGTACCAAGCGAGCCGGAAACACCAACACCGCCAACGCCAGAGGTACCAACT
GAACCTGGTAAACCAATACCACCTGCTAAAGAAGAACCTAAAAAACCTTCTAAACCAGTG
GAACAAGGTAAAGTAGTAACACCTGTTATTGAAATCAATGAAAAGGTTAAAGCAGTGGTA
CCAACTAAAAAAGCACAATCTAAGAAATCTGAACTACCTGAAACAGGTGGAGAAGAATCA
ACAAACAACGGCATGTTGTTCGGCGGATTATTTAGCATTCTAGGTTTAGCATTATTACGC
AGAAATAAAAAGAATCACAAAGCATAA60
120
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387
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_2398
- symbol: NWMN_2398
- description: C-terminal part of fibronectin binding protein A
- length: 128
- theoretical pI: 7.54389
- theoretical MW: 13659.6
- GRAVY: -0.878125
⊟Function[edit | edit source]
- TIGRFAM: Cell envelope Other LPXTG cell wall anchor domain (TIGR01167; HMM-score: 29.9)and 1 morepullulanase, extracellular (TIGR02102; HMM-score: 13.5)
- TheSEED:
- PFAM: no clan defined Gram_pos_anchor; LPXTG cell wall anchor motif (PF00746; HMM-score: 38)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cellwall
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 10
- Extracellular Score: 0
- Internal Helix: 1
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 0.83
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.184826
- TAT(Tat/SPI): 0.174121
- LIPO(Sec/SPII): 0.031849
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MPPTPPTPEVPSEPETPTPPTPEVPSEPETPTPPTPEVPTEPGKPIPPAKEEPKKPSKPVEQGKVVTPVIEINEKVKAVVPTKKAQSKKSELPETGGEESTNNGMLFGGLFSILGLALLRRNKKNHKA
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.