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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_2608 [new locus tag: NWMN_RS14935 ]
  • pan locus tag?: SAUPAN006482000
  • symbol: NWMN_2608
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_2608 [new locus tag: NWMN_RS14935 ]
  • symbol: NWMN_2608
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2872202..2872555
  • length: 354
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGTTTTCAATTGGAAGTGCAATTCTTCATTTTGTCATTGGTGGTATCGCTGTTGCATTA
    GCTTCAATTATTGCTGATAAGGTAGGTGGTAAGTTAGGAGGTATTATAGCTACTATGCCG
    GCAGTCTTTCTTGCGGCTATTATCGCATTAGCTTTAGATCATCGTGGTACGCAATTAGTG
    GAGATGTCGATGAATCTTAGTACTGGAGCAATTGTCGGTATTCTGTCTTGTATATTAACT
    GTATTTTTGACATCTCTCTACATTAAGCATAAAGGTTATCGGAAAGGCGCAATATTCACA
    GTTGTTTGTTGGTTTGTCATTTCCCTCGCAATATTCAGTATTAGACATTTATAG
    60
    120
    180
    240
    300
    354

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_2608 [new locus tag: NWMN_RS14935 ]
  • symbol: NWMN_2608
  • description: hypothetical protein
  • length: 117
  • theoretical pI: 10.178
  • theoretical MW: 12330.9
  • GRAVY: 1.2735

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Unknown substrate MFS transporter, metabolite:H+ symporter (MHS) family protein (TIGR00883; HMM-score: 13.5)
    and 1 more
    oligosaccharyl transferase, archaeosortase A system-associated (TIGR04154; EC 2.4.1.-; HMM-score: 5.4)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    GlpM-like (CL0420) DUF3147; Protein of unknown function (DUF3147) (PF11345; HMM-score: 153)
    and 4 more
    no clan defined Chromate_transp; Chromate transporter (PF02417; HMM-score: 13.4)
    DUF485; Protein of unknown function, DUF485 (PF04341; HMM-score: 8.9)
    Apoptosis-Inhib (CL0453) BaxI_1; Bax inhibitor 1 like (PF12811; HMM-score: 6.7)
    ABC-2 (CL0181) ABC2_membrane_5; ABC-2 family transporter protein (PF13346; HMM-score: 6.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 2
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.09323
    • TAT(Tat/SPI): 0.004443
    • LIPO(Sec/SPII): 0.033966
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MFSIGSAILHFVIGGIAVALASIIADKVGGKLGGIIATMPAVFLAAIIALALDHRGTQLVEMSMNLSTGAIVGILSCILTVFLTSLYIKHKGYRKGAIFTVVCWFVISLAIFSIRHL

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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