PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus Newman
• locus tag: NWMN_RS01320 [old locus tag: NWMN_0238 ]
• pan locus tag^?: SAUPAN001215000
• symbol: NWMN_RS01320
• pan gene symbol^?: —
• synonym:
• product: TIGR01741 family protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: NWMN_RS01320 [old locus tag: NWMN_0238 ]
• symbol: NWMN_RS01320
• product: TIGR01741 family protein
• replicon: chromosome
• strand: +
• coordinates: 295527..296027
• length: 501
• essential: unknown

⊟Accession numbers

• Location: NC_009641 (295527..296027) NCBI
• BioCyc:
• MicrobesOnline: see NWMN_0238

⊟Phenotype

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⊟DNA sequence

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  ATGACTTTCGAAGAAAAACTAAGTGAAATATACAACAAGATTGCGAATGAGATTAGTGGG
  ATGATACCAGTAGAATGGGACCAAGTATTTACGATAGCTTATGTAAATGATAGAGGTGGA
  GAGATCGTTTTTAATTATACTAAACCAGGTAGCGATGAATTGAATTATTACACATATATC
  CCTAGAGAGTATAATGTCTCTGAAAAAGTATTTTATGATTTGTGGACGGATTTATATAGA
  TTGTTTAAGAAGTTAAGAAACGCATTTAAAGAAGAAGATTTAGAACCATGGACATCATGT
  GAATTTGACTTTACAAGAGATGGTAAATTGAATGTTGTATTTGATTATGTTGATTGGATG
  AATTCAGAATTTGGTCCAATAGCAAAAGAAAATTATTATATGTACAAAAAGTTTGGTGTT
  TTACCAGAAACGGAATATGAAATTAATAAAGTTAAAGAAATCGATCAATATGTTAAAGAG
  CAAGATGAAGCTGAACTATAG
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  501
  

⊟Protein

⊟General

• locus tag: NWMN_RS01320 [old locus tag: NWMN_0238 ]
• symbol: NWMN_RS01320
• description: TIGR01741 family protein
• length: 166
• theoretical pI: 4.14516
• theoretical MW: 20015.3
• GRAVY: -0.648795

⊟Function

• TIGRFAM:
  conserved hypothetical protein (TIGR01741; HMM-score: 234.4)
  and 1 more
  Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage portal protein, SPP1 family (TIGR01538; HMM-score: 15.3)
• TheSEED: data available for COL, USA300_FPR3757
• PFAM:
  no clan defined DUF600; Protein of unknown function, DUF600 (PF04634; HMM-score: 155.3)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.005899
  • TAT(Tat/SPI): 0.000347
  • LIPO(Sec/SPII): 0.000688
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 446064127 NCBI
• RefSeq: WP_000141982 NCBI
• UniProt: see NWMN_0238

⊟Protein sequence

• MTFEEKLSEIYNKIANEISGMIPVEWDQVFTIAYVNDRGGEIVFNYTKPGSDELNYYTYIPREYNVSEKVFYDLWTDLYRLFKKLRNAFKEEDLEPWTSCEFDFTRDGKLNVVFDYVDWMNSEFGPIAKENYYMYKKFGVLPETEYEINKVKEIDQYVKEQDEAEL

⊟Experimental data

• experimentally validated: data available for COL
• protein localization: data available for COL
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications