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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS01655 [old locus tag: NWMN_0289 ]
  • pan locus tag?:
  • symbol: NWMN_RS01655
  • pan gene symbol?: —
  • synonym:
  • product: terminase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS01655 [old locus tag: NWMN_0289 ]
  • symbol: NWMN_RS01655
  • product: terminase
  • replicon: chromosome
  • strand: +
  • coordinates: 338570..339793
  • length: 1224
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (338570..339793) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_0289

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGAATAAACTTAAATCTTTATATACGGACAAACAAATTGAAATATTGAAGCAAACGCAA
    AAACAAGATTGGTTTATGTTAATTAATCACGGAGCAAAGCGTACAGGTAAAACAATATTA
    AACAATGACTTATTTTTACGTGAGTTAATGCGTGTGCGAAAGATAGCAGACGAAGAAGGA
    ATTGAGACACCTCAATATATACTTGCTGGTGCAACATTAGGTACGATTCAAAAAAACGTA
    CTAATAGAGTTAACTAACAAATATGGCATTGAGTTTAATTTTGATAAATATAATTCATTC
    ATGTTATTTGGCGTTCAAGTGGTTCAGACAGGTCACAGTAAAGTAAGTGGTATAGGAGCT
    ATACGTGGTATGACATCGTTTGGTGCATATATCAATGAAGCGTCGTTAGCGCATGAAGAG
    GTGTTTGACGAGATTAAGTCACGTTGTAGTGGAACTGGTGCAAGAATATTGGTAGATACC
    AACCCTGACCATCCCGAGCATTGGTTGTTGAAAGATTATATTGAAAATACAGATCCTAAA
    GCAGGTATACTGAGTCACCAATTTAAGCTCGATGACAATAACTTTCTTAATGATAGATAT
    AAAGAGTCTATTAAGGCTTCAACACCATCAGGTATGTTCTATGAACGTAATATCAACGGT
    ATGTGGGTGTCTGGTGACGGTGTAGTATATGCCGACTTTGATTTGAATGAGAATACGATT
    AAAGCAGATGAACTGGACGACATACCTATCAAAGAATACTTTGCTGGTGTCGACTGGGGT
    TACGAGCACTATGGATCTATTGTGTTAATAGGACGAGGTATAGATGGTAACTTTTATTTT
    ATTGAGGAGCACGCACACCAATTTAAGTTTATTGATGATTGGGTGGTTATTGCAAAAGAT
    ATTGTAAGTAGATATGGCAATATTAATTTTTACTGCGATACTGCACGACCTGAATACATC
    ACTGAATTTAGAAGACATAGATTACGTGCAATTAACGCTGATAAAAGTAAACTATCGGGT
    GTAGAGGAAGTTGCTAAGTTGTTCAAACAAAACAAGTTACTTGTTCTTTATGATAATATG
    GATAGGTTTAAGCAAGAGGTATTTAAATATGTTTGGCACCCTACAAACGGAGAGCCTATA
    AAAGAATTTGATGACGTGTTGGACTCGTTAAGATATGCCATATACACACATACTAAACCT
    GAACGATTAAGGAGGGGGAAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1224

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS01655 [old locus tag: NWMN_0289 ]
  • symbol: NWMN_RS01655
  • description: terminase
  • length: 407
  • theoretical pI: 6.38713
  • theoretical MW: 47126.1
  • GRAVY: -0.479607

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage terminase, large subunit, PBSX family (TIGR01547; HMM-score: 150)
  • TheSEED:
  • PFAM:
    P-loop_NTPase (CL0023) Terminase_6; Terminase-like family (PF03237; HMM-score: 33.1)
    Terminase_3; Phage terminase large subunit (PF04466; HMM-score: 31.4)
    and 3 more
    RNase_H (CL0219) Terminase_6C; Terminase RNaseH-like domain (PF17289; HMM-score: 17.8)
    no clan defined ZoocinA_TRD; Target recognition domain of lytic exoenzyme (PF16775; HMM-score: 15.8)
    Actin_ATPase (CL0108) Actin_micro; Putative actin-like family (PF17003; HMM-score: 12.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002269
    • TAT(Tat/SPI): 0.000184
    • LIPO(Sec/SPII): 0.000403
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNKLKSLYTDKQIEILKQTQKQDWFMLINHGAKRTGKTILNNDLFLRELMRVRKIADEEGIETPQYILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGAIRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNMDRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYAIYTHTKPERLRRGK

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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