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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS03540 [old locus tag: NWMN_0623 ]
  • pan locus tag?: SAUPAN002532000
  • symbol: NWMN_RS03540
  • pan gene symbol?: proT
  • synonym:
  • product: membrane protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS03540 [old locus tag: NWMN_0623 ]
  • symbol: NWMN_RS03540
  • product: membrane protein
  • replicon: chromosome
  • strand: +
  • coordinates: 704591..705658
  • length: 1068
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (704591..705658) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_0623

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGATGATGAATAAAGAAGCAACAAAAATTGGATTTGCCTACGTCGGCATTGTAGTGGGC
    GCAGGATTTTCAACTGGACAAGAAGTTATGCAATTTTTCACTAAATATGGCTTGTGGGCT
    TATTTAGGTGTTATTATATCTGGTTTTATTTTAGCTTTTATTGGGCGCCAAGTAGCAAAA
    ATTGGTACTGCCTTTGAAGCGACAAATCATGAATCAACATTACAATACGTATTCGGTGAA
    AAGTTTAGTAAAGTCTTTGATTATATTTTAATCTTCTTCTTATTTGGTATAGCTGTAACC
    ATGATAGCTGGTGCAGGCGCAACATTTGAAGAAAGTTATAACATACCTACATGGCTAGGT
    GCTTTAATTATGACATTAGCGATTTATATTACGTTGCTATTAGACTTTAATAAAATAGTA
    CGTGCACTAGGTATCGTTACACCATTTTTAATTGTTTTAGTTGTATTAATCGCTGGCGTT
    TATTTATTTAAAGGTCATGTTTCATTAGCAGAAGTTAACCAAGTAGTGCCTGAAGCAAGT
    ATTTGGAAGGGAATCTGGTTTGGTACAATATATGGTGGATTAGCTTTTTCTGTAGGTTTT
    AGTACCATCGTAGCAATCGGTGGGGATACTGAAAAGCGTACAGTGTCAGGTGCAGGCGCG
    ATGTATGGTGGTATTATCTATACTGTATTACTAGCATTGATCAACTTTGCATTGCAAAGT
    GAATATCCAACTATTAAAAATGCCTCAATTCCTACATTGACGTTAGCAAATAATATCCAT
    CCTTTAATAGCAACAGTGTTATCTGTTATTATGCTGGCGGTTATGTATAATACTATTCTA
    GGACTAATGTATTCATTTGCAGCACGTTTTACAGAACCATACAGTAAAAATTATCATATC
    TTTATTATTATAATGATGGTAGCAGGTTATTTATTAAGTTTCGTAGGATTTGCTGAATTA
    ATTAATAAGTTATATACAATTATGGGATATGTAGGCTTATTTATTGTAGTAGCTGTAATT
    ATTAAATATTTCAAACGTAAAAATGCGGATAAAAAACATATTGCTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1068

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS03540 [old locus tag: NWMN_0623 ]
  • symbol: NWMN_RS03540
  • description: membrane protein
  • length: 355
  • theoretical pI: 9.52451
  • theoretical MW: 38943.1
  • GRAVY: 0.868451

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    no clan defined Holin_BhlA; BhlA holin family (PF10960; HMM-score: 13.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006627
    • TAT(Tat/SPI): 0.00037
    • LIPO(Sec/SPII): 0.024078
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MMMNKEATKIGFAYVGIVVGAGFSTGQEVMQFFTKYGLWAYLGVIISGFILAFIGRQVAKIGTAFEATNHESTLQYVFGEKFSKVFDYILIFFLFGIAVTMIAGAGATFEESYNIPTWLGALIMTLAIYITLLLDFNKIVRALGIVTPFLIVLVVLIAGVYLFKGHVSLAEVNQVVPEASIWKGIWFGTIYGGLAFSVGFSTIVAIGGDTEKRTVSGAGAMYGGIIYTVLLALINFALQSEYPTIKNASIPTLTLANNIHPLIATVLSVIMLAVMYNTILGLMYSFAARFTEPYSKNYHIFIIIMMVAGYLLSFVGFAELINKLYTIMGYVGLFIVVAVIIKYFKRKNADKKHIA

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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