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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS05700 [old locus tag: NWMN_1010 ]
- pan locus tag?: SAUPAN001389000
- symbol: NWMN_RS05700
- pan gene symbol?: yopX
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS05700 [old locus tag: NWMN_1010 ]
- symbol: NWMN_RS05700
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1112633..1113082
- length: 450
- essential: unknown
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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421ATGATGCCGAAATATCGAGTGTGGGACGAATATACAGGAAGAATACACGATGTTGTAGGA
TTCGACTTCATTGAGACTGAAGTTCACTATGAAAACTACGCGGAAGCAGAAGCTTTAATA
CATGCAAGAGATTTTAAAGATGTAGAACTTATGCAAAGTACAGGACTTAAAGACAAAAAC
AACAACGAAATATATGCGGGAGATATAGTTGAGTTTGAAGATGAAATATTAGAGATGCCA
GACGATGAATCTGTAATAGGAACAATTAATAGAGCAGTAATATCTATTGATGTTGTAAAT
GGTATTCAATTAAAAGATTTTATGTTTGAGGGCGCAGTCTCCGAAAATGATTACTTTGAG
TATATAGACATAAAATCCTTCCTTAGATATGACTGTGAGGTTAAAGGCAACATATTTGAA
TCATCACATTTATTGGAGGTAACAGAATGA60
120
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450
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS05700 [old locus tag: NWMN_1010 ]
- symbol: NWMN_RS05700
- description: hypothetical protein
- length: 149
- theoretical pI: 3.95374
- theoretical MW: 17339.2
- GRAVY: -0.32953
⊟Function[edit | edit source]
- TIGRFAM: Hypothetical proteins Conserved phage conserved hypothetical protein TIGR01671 (TIGR01671; HMM-score: 57.3)Mobile and extrachromosomal element functions Prophage functions phage conserved hypothetical protein TIGR01671 (TIGR01671; HMM-score: 57.3)
- TheSEED: see NWMN_1010
- PFAM: no clan defined YopX; YopX protein (PF09643; HMM-score: 65.5)and 2 moreOrthopox_A47; Orthopoxvirus A47 protein (PF06334; HMM-score: 12.2)HIF-1a_CTAD; HIF-1 alpha C terminal transactivation domain (PF08778; HMM-score: 11.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.8875
- Cytoplasmic Membrane Score: 0.006
- Cell wall & surface Score: 0.0003
- Extracellular Score: 0.1062
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003257
- TAT(Tat/SPI): 0.000135
- LIPO(Sec/SPII): 0.000293
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MMPKYRVWDEYTGRIHDVVGFDFIETEVHYENYAEAEALIHARDFKDVELMQSTGLKDKNNNEIYAGDIVEFEDEILEMPDDESVIGTINRAVISIDVVNGIQLKDFMFEGAVSENDYFEYIDIKSFLRYDCEVKGNIFESSHLLEVTE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.