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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS05770 [old locus tag: NWMN_1018 ]
  • pan locus tag?: SAUPAN001685000
  • symbol: NWMN_RS05770
  • pan gene symbol?:
  • synonym:
  • product: phage capsid protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS05770 [old locus tag: NWMN_1018 ]
  • symbol: NWMN_RS05770
  • product: phage capsid protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1120119..1120733
  • length: 615
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_009641 (1120119..1120733) NCBI
  • BioCyc:
  • MicrobesOnline:

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGGATATCCAAGAGAAGTTAAAACTCAAATTACAGTTTTTTGCTGAAGAATCAGATGGA
    GATAATGGAAAATCAAAAGATAACAACGATGATGAAGGCAAAGACAAACAAGACAAAAAG
    ACTAATTCAGAAGAAGAAATCGAAAAAAGACTACAAGAAGAATATAACAAGCGTCTTAAA
    GAAGAATTAAGTCGTCGTATGAAGCAGAAAGAAAAAGAGAAACAAGAAGCTGTTGATGAA
    GCTAAACGATTAGCAAAAATGAACAAAGATCAAATCGCTGAATATGAACGCGAACAAATG
    GAAAAAGAGCTGGAACAATTACGTTCAGAAAAACAATTAAACGAAATGCGTTCAGAAGCA
    CGAAAAATGTTGAGTGAAGCGGAAGTTGATTCATCAGATGAGGTTGTCAATTTGGTTGTA
    ACTGACACTGCTGAACAAACCAAATCGAACGTTGAAGCTTTTTCTAATGCAGTAAAAAAA
    GCGGTTAATGAAGCGGTTAAGGTTAACGCTAGACAATCGCCATTGACTGGTGGAGATTCA
    TTTAATCACTCGACTAAAAATAAACCGCAAAACTTAGCTGAAATAGCTAGACAAAAAAGA
    ATTATTAAAAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    615

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_RS05770 [old locus tag: NWMN_1018 ]
  • symbol: NWMN_RS05770
  • description: phage capsid protein
  • length: 204
  • theoretical pI: 5.19987
  • theoretical MW: 23664.2
  • GRAVY: -1.40882

Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds ferrous iron transport protein B (TIGR00437; HMM-score: 2.9)
  • TheSEED:
  • PFAM:
    no clan defined DUF4355; Domain of unknown function (DUF4355) (PF14265; HMM-score: 94.8)
    and 2 more
    Peptidase_MA (CL0126) DUF45; Protein of unknown function DUF45 (PF01863; HMM-score: 8.5)
    no clan defined Tfb2; Transcription factor Tfb2 (PF03849; HMM-score: 7.7)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008156
    • TAT(Tat/SPI): 0.001648
    • LIPO(Sec/SPII): 0.004845
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

  • GI: 446276452 NCBI
  • RefSeq: WP_000354307 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MDIQEKLKLKLQFFAEESDGDNGKSKDNNDDEGKDKQDKKTNSEEEIEKRLQEEYNKRLKEELSRRMKQKEKEKQEAVDEAKRLAKMNKDQIAEYEREQMEKELEQLRSEKQLNEMRSEARKMLSEAEVDSSDEVVNLVVTDTAEQTKSNVEAFSNAVKKAVNEAVKVNARQSPLTGGDSFNHSTKNKPQNLAEIARQKRIIKN

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]