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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS06635
- pan locus tag?:
- symbol: NWMN_RS06635
- pan gene symbol?: —
- synonym:
- product: DNA-binding protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS06635
- symbol: NWMN_RS06635
- product: DNA-binding protein
- replicon: chromosome
- strand: +
- coordinates: 1295765..1296049
- length: 285
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_009641 (1295765..1296049) NCBI
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241ATGAAAAAGAAAAAAATTCCGATGCGAAAATGTATTCTTTCAAATGAAATGCATCCCAAA
AAAGATATGATTCGTGTTGTTGTTAATAAAGAAGGCGAAATCTTTGCGGATGTTACTGGA
AAGAAACAAGGCCGTGGCGCATATGTTTCTAAAGATGTTGCTATGGTTGAAAAAGCACAA
CAAAAAGAAATTTTAGAAAAATATTTTAAAGCATCTAAAGAGCAATTGGATCCTGTTTAC
AAAGAAATTATTAGATTAATTTATAGAGAAGAGATCCCAAAATGA60
120
180
240
285
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS06635
- symbol: NWMN_RS06635
- description: DNA-binding protein
- length: 94
- theoretical pI: 10.3227
- theoretical MW: 11040.1
- GRAVY: -0.705319
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: no clan defined YlxR; Protein of unknown function (DUF448) (PF04296; HMM-score: 90.6)and 5 moreCdiI_2; CdiI immunity protein (PF18593; HMM-score: 14)DUF3294; Protein of unknown function (DUF3294) (PF07957; HMM-score: 13.4)ACDC; AP2-coincident C-terminal (PF14733; HMM-score: 13.3)NTF2 (CL0051) DUF6715; Domain of unknown function (DUF6715) (PF20462; HMM-score: 13.3)Apolipoprotein (CL0725) ApoA-II; Apolipoprotein A-II (ApoA-II) (PF04711; HMM-score: 13.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9904
- Cytoplasmic Membrane Score: 0.0006
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0089
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.010768
- TAT(Tat/SPI): 0.000449
- LIPO(Sec/SPII): 0.001392
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKKKKIPMRKCILSNEMHPKKDMIRVVVNKEGEIFADVTGKKQGRGAYVSKDVAMVEKAQQKEILEKYFKASKEQLDPVYKEIIRLIYREEIPK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.