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NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS07550 [old locus tag: NWMN_1340 ]
  • pan locus tag?: SAUPAN003861000
  • symbol: NWMN_RS07550
  • pan gene symbol?: cvfC
  • synonym:
  • product: virulence factor C

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS07550 [old locus tag: NWMN_1340 ]
  • symbol: NWMN_RS07550
  • product: virulence factor C
  • replicon: chromosome
  • strand: -
  • coordinates: 1472478..1473602
  • length: 1125
  • essential: unknown other strains

Accession numbers[edit | edit source]

  • Location: NC_009641 (1472478..1473602) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1340

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGGAAATTTTACGTATAGAGCCAACACCAAGTCCAAATACAATGAAAGTTGTTTTGTCA
    TATACAAGAGAAGACAAGTTATCTAATACTTATAAAAAAGTAGAAGAAACACAACCAAGA
    TTTATAAATCAGTTGTTATCTATAGATGGTATCACTTCCATTTTTCATGTCATGAACTTC
    TTAGCTGTTGATAAGGCACCAAAAGCTGATTGGGAAGTCATATTACCTGATATTAAAGCT
    GCTTTTTCTGATGCGAATAAGGTTTTAGAATCTGTAAATGAACCTCAAATTGACAATCAT
    TTTGGTGAAATTAAAGCTGAATTATTAACTTTTAAGGGTATACCGTATCAAATTAAGCTA
    ACTTCTGCTGACCAAGAATTAAGAGAACAATTACCACAAACATATGTTGACCATATGACT
    CAAGCGCAAACAGCACATGACAATATTGTTTTTATGCGTAAATGGCTAGATTTAGGAAAT
    CGCTATGGAAATATTCAAGAAGTAATGGATGGTGTCCTAGAAGAAGTGCTAGCTACCTAT
    CCAGAATCACAGTTACCCGTATTGGTAAAACATGCTTTAGAAGAAAATCACGCAACTAAT
    AATTATCATTTCTATCGACATGTCTCTTTGGATGAATATCATGCAACTGATAATTGGAAG
    ACTCGATTACGAATGTTAAACCATTTTCCAAAGCCGACTTTTGAAGATATACCGCTGCTT
    GATTTAGCTTTATCTGATGAAAAAGTACCGGTTAGACGTCAAGCGATTGTATTATTAGGT
    ATGATTGAAAGTAAAGAAATTTTACCGTATTTATATAAGGGGCTTCGTGATAAAAGTCCT
    GCTGTAAGAAGAACAGCAGGGGATTGCATAAGCGATTTAGGGTATCCAGAGGCACTACCA
    GAAATGGTGCTACTATTAGATGATCCACAGAAAATCGTTAGGTGGCGTGCTGCTATGTTT
    ATCTTTGATGAAGGTAATGCAGAGCAGCTTCCCGCACTAAAAGCCCATATTAATGACAAT
    GCGTTTGAAGTTAAATTACAAATTGAAATGGCCATATCTCGTATTGAAAACGGAGATGAA
    GCACTTGGTTCAGTATGGAAACAAATGGCAAACAGAACAATTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1125

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_RS07550 [old locus tag: NWMN_1340 ]
  • symbol: NWMN_RS07550
  • description: virulence factor C
  • length: 374
  • theoretical pI: 5.09121
  • theoretical MW: 42922.9
  • GRAVY: -0.338235

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    no clan defined Virulence_fact; Virulence factor (PF13769; HMM-score: 89)
    and 8 more
    Nfu_N; Scaffold protein Nfu/NifU N terminal (PF08712; HMM-score: 64.4)
    TPR (CL0020) HEAT_2; HEAT repeats (PF13646; HMM-score: 53.8)
    HEAT_EZ; HEAT-like repeat (PF13513; HMM-score: 32.6)
    HEAT; HEAT repeat (PF02985; HMM-score: 32.4)
    Cnd1; non-SMC mitotic condensation complex subunit 1 (PF12717; HMM-score: 27.1)
    HEAT_PBS; PBS lyase HEAT-like repeat (PF03130; HMM-score: 17.3)
    no clan defined DUF4088; Protein of unknown function (DUF4088) (PF13317; HMM-score: 12.5)
    TPR (CL0020) Adaptin_N; Adaptin N terminal region (PF01602; HMM-score: 10.7)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003062
    • TAT(Tat/SPI): 0.00031
    • LIPO(Sec/SPII): 0.000715
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MEILRIEPTPSPNTMKVVLSYTREDKLSNTYKKVEETQPRFINQLLSIDGITSIFHVMNFLAVDKAPKADWEVILPDIKAAFSDANKVLESVNEPQIDNHFGEIKAELLTFKGIPYQIKLTSADQELREQLPQTYVDHMTQAQTAHDNIVFMRKWLDLGNRYGNIQEVMDGVLEEVLATYPESQLPVLVKHALEENHATNNYHFYRHVSLDEYHATDNWKTRLRMLNHFPKPTFEDIPLLDLALSDEKVPVRRQAIVLLGMIESKEILPYLYKGLRDKSPAVRRTAGDCISDLGYPEALPEMVLLLDDPQKIVRWRAAMFIFDEGNAEQLPALKAHINDNAFEVKLQIEMAISRIENGDEALGSVWKQMANRTI

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]