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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS09055 [old locus tag: NWMN_1614 ]
  • pan locus tag?: SAUPAN004375000
  • symbol: NWMN_RS09055
  • pan gene symbol?: —
  • synonym:
  • product: glycerophosphoryl diester phosphodiesterase

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS09055 [old locus tag: NWMN_1614 ]
  • symbol: NWMN_RS09055
  • product: glycerophosphoryl diester phosphodiesterase
  • replicon: chromosome
  • strand: -
  • coordinates: 1792195..1792938
  • length: 744
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (1792195..1792938) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1614

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGACTCTGAATAAACTGAAAGATGAATTACAAATTGTTTCGCACCGTGGATTGCCGAGT
    GATTTTCCTGAAAATACAATGGTCGGTTATCGAGAGGTAATGGGGCTCAATGTTGCTATG
    TTAGAAATAGATGTTCATTTGACCAAAGACCAACATTTTGTTGTGATACATGATGAAACA
    ATTGATAGAACATCGGATGGTAAGGGGCGTATTGCTGATTACACATTATCGCAATTAAAA
    TCATTTGATTTTGGTAGTTATAAAGATGTTGCTTTTAAGGGAGAACGAATACCCACGTTA
    GATGAAGTACTTTCATTATGCTTAAAGTATGATAAAAAGCTATTGATTGAATTGAAAAGT
    CCGAATTTATATCCAGAAATAGAATGTAAATTGCTGGCATTTTTGGAAGAAAAGAAAGTC
    GATGCGACACAAGTAGTTATACAATCTTTTGATATCGAATGCATCGAAAAGTTAAACACA
    TTGGGCAGTATATATGAATTAGGTGTGCTTTGTAGTAAACGTAATTATTGGTATAAAAAG
    CCAAACTTTTCAAGAATTGCTCAAATTGCTAGTTATGTTAATCCTAATTATGCATTAGTG
    ACCAGAAAATTTGTTGATAAAGCACATCATCATCAATTACAGGTTATGCCATACACAGTT
    AATAAATTGAAAACTGGAGAAAAATTAAGACAAATGGGTGTAGATGGATTAATTACAGAT
    AATCCGAAATTATTTATTAAGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    744


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS09055 [old locus tag: NWMN_1614 ]
  • symbol: NWMN_RS09055
  • description: glycerophosphoryl diester phosphodiesterase
  • length: 247
  • theoretical pI: 7.97488
  • theoretical MW: 28404.8
  • GRAVY: -0.276923

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see NWMN_1614
  • PFAM:
    TIM_barrel (CL0036) GDPD; Glycerophosphoryl diester phosphodiesterase family (PF03009; HMM-score: 166)
    and 2 more
    GDPD_2; Glycerophosphoryl diester phosphodiesterase family (PF13653; HMM-score: 20)
    DNA_prim_N (CL0748) Helic-prim_T7_N; Bacteriophage T7 DNA helicase/primase, N-terminal a+b fold (PF21268; HMM-score: 14.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9172
    • Cytoplasmic Membrane Score: 0.0536
    • Cell wall & surface Score: 0.0074
    • Extracellular Score: 0.0219
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001056
    • TAT(Tat/SPI): 0.000151
    • LIPO(Sec/SPII): 0.000193
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTLNKLKDELQIVSHRGLPSDFPENTMVGYREVMGLNVAMLEIDVHLTKDQHFVVIHDETIDRTSDGKGRIADYTLSQLKSFDFGSYKDVAFKGERIPTLDEVLSLCLKYDKKLLIELKSPNLYPEIECKLLAFLEEKKVDATQVVIQSFDIECIEKLNTLGSIYELGVLCSKRNYWYKKPNFSRIAQIASYVNPNYALVTRKFVDKAHHHQLQVMPYTVNKLKTGEKLRQMGVDGLITDNPKLFIK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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