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COLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS09515
- pan locus tag?:
- symbol: NWMN_RS09515
- pan gene symbol?: —
- synonym:
- product: transposase
⊟Additional information (user-provided)[edit | edit source]
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS09515
- symbol: NWMN_RS09515
- product: transposase
- replicon: chromosome
- strand: -
- coordinates: 1888889..1889098
- length: 210
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_009641 (1888889..1889098) NCBI
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟DNA sequence[edit | edit source]
- 1
61
121
181ATGTGTAAAGTCCTGATAATACTAAGAAGTACCTATTATGATTCTATAAAAAGAAAAGAT
AATAAAATCACTAAAGATGATTCAAACATAGAACATGCCGTCATAAATATTTTTAATTCT
AATAGAAAAGTCTTTGGTACAAGACGAATTAAAAATCATTTAAATGACAAGGGTCTCACT
GTATCTGGACAAAAGATAGGTCGATCATGA60
120
180
210
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS09515
- symbol: NWMN_RS09515
- description: transposase
- length: 69
- theoretical pI: 10.92
- theoretical MW: 7963.17
- GRAVY: -0.652174
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: HTH (CL0123) HTH_21; HTH-like domain (PF13276; HMM-score: 26)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9359
- Cytoplasmic Membrane Score: 0.0001
- Cell wall & surface Score: 0.0361
- Extracellular Score: 0.028
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008724
- TAT(Tat/SPI): 0.000438
- LIPO(Sec/SPII): 0.00139
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Protein sequence[edit | edit source]
- MCKVLIILRSTYYDSIKRKDNKITKDDSNIEHAVINIFNSNRKVFGTRRIKNHLNDKGLTVSGQKIGRS
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Additional information (user-provided)[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Other information (user-provided)[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]