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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS10175 [old locus tag: NWMN_1780 ]
  • pan locus tag?:
  • symbol: NWMN_RS10175
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS10175 [old locus tag: NWMN_1780 ]
  • symbol: NWMN_RS10175
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1993831..1997298
  • length: 3468
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (1993831..1997298) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1780

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

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    1021
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    GTGACGGAATATAAAATTAAAGCGACTATTGAAGCAAGTGTAGCTAAATTCAAAAAGCAA
    ATTGATAGTGCGGTTAAATCTGTACAAAAATTCAAAAGAGTAGCAGATCAAACTAAAGAT
    GTTGAATTAAACGCTAACGATAAAAAATTACAAAAAACTATCAAGGTTGCTAAAAAGTCT
    TTAGATGCCTTTAGCAACAAAAATGTAAAAGCTAAATTAGATGCTAGTATACAAGACTTA
    CAACAAAAGATATTAGAATCAAATTTTGAACTAGACAAACTTAACTCCAAAGAAGCTAGC
    CCAGAAGTTAAACTACAAAAACAAAAGTTAACTAAAGATATCGCTGAAGCAGAAGCTAAG
    TTATCCGAACTGGAAAAGAAACGTGTCAATATTGACGTCAATGCAGATAACAGTAAATTC
    AATCGAGTGTTAAAAGTATCTAAAGCTAGTCTTGAAGCATTAAATAGGTCTAAAGCTAAA
    GCTTTTATAGACGTGGACAATGGTGTTGCTAACTCTAAAATAAAACGCACTAAAGAAGAG
    CTTAAAAGTATTCCAAACAAAACTAGATCTCGACTAGAGGTAGATACAGGACTTTCTATC
    CCAACTATTTATGCGTTCAAAAAATCATTAGACGCATTACCGAACAAAAAAACAACAAAG
    GTAGATGTAGATACTAATGGTTTAAAGAAAGCTTATGCCTACATAATAAAAGCAAACGAC
    AATTTCCAAAGACAGATGGGGAATTTAGCTAATATGTTCCGTGTGTTCGGTACTGTAGGT
    TCTAATATGGTTGGTGGATTACTAACTTCATCTTTTAGCATTTTAATACCTATAATAGCG
    AGCGTAGTACCTGTAGTGTTTGCACTATTAAACGCTATCAAAGTGTTAACTGGTGGTGTA
    CTTGCTTTAGGTGGTGCGGTAGCAATAGCCGGCGCTGGCTTTGTAGCATTTGGCGCAATG
    GCTATCAGCGCTATAAAGATGCTTAATGATGGCACTTTACAAGCTAGCTCAGCAACAAAC
    GAATACAAAAAAGCTTTAGATGGCGTAAAGTCAGCATGGACTGATATTATAAAGCAAAAT
    CAATCCGCTATCTTCACAACTCTTGCAAATGGTTTAAATACTGTTAAAACAGCAATGCAA
    AGCTTGCAACCGTTTTTTAGTGGTATTTCAAGAGGAATGGAAGAGGCGTCTCAAAGTGTA
    CTTAAATGGGCTCAAAATAGCGGTGTAGCATCAAGGTTCTTCAACATGATGAATACAACT
    GGTGTTTCGGTATTTAACAAGCTATTAAGTGCTGCAGGCGGTTTCGGTGACGGATTAGTC
    AATGTATTCACACAATTAGCGCCACTGTTTCAATGGTCGGCTGATTGGTTGGATAGATTA
    GGTCAATCTTTCTCTAACTGGGCTAATAGTGCAGCTGGAGAAAATTCGATAACTCGTTTT
    ATTGAATACACAAAAACAAACTTACCTATCATTGGTAATATTTTCAAAAATGTTTTCGTT
    GGAATTAACAATTTGATGAATGCATTCAGCGGATCATCAACTGGAATCTTCCAGTCTCTT
    GAACAGATGACTGCTAAATTCAGAGAATGGTCTGAACAAGTTGGACAATCACAAGGGTTT
    AAAGATTTTGTCAGCTATATACAAACTAATGGACCACTAATAATGCAATTGATTGGAAAC
    ATCGCAAGAGGATTAGTTGCATTCGCAACAGCAATGGCTCCTATAGCTAGTGCAGTATTA
    CGCGTTGCAGTAGCAATAACTGGTTGGATAGCTAACTTGTTTGAGGCGCATCCGGCTACA
    GCACAATTAGTTGGTGTCATTATAACTTTAGTTGGTGCATTTAGATTTTTAATACCGATT
    ATTCTTGCTGTATCTAACTTTATGGGTGGCGGATTAATAGGTAGAATCATTGCATTAGTA
    AGTAAGTTCGGTTTATTAAGAGCGGGATTAACAATTTTAAAAGGTGCGTTCATGTTATTA
    AAAGGACCATTAAAAATTATATCAGTTATATTCCAATTGTTATTCGGTAAGATTGGATTA
    ATTAGAAATGCTATCACAGGACTAGTAACTGTGTTTGGTATTTTAGGTGGTCCAATAACA
    ATAGTTATTGGTGTAATCGCTGCATTAATAGCTATATTCGTTTTATTGTGGAATAAAAAT
    GAAGGATTCAGAAACTTTATTATAAATGCTTGGAATGCGATAAAAACGTTTATGGTTACA
    GTTTGGAATGTGTTGAAAACTGTAGCTTCGGTTGTATGGAATGCTATTTTAAAAGCTATC
    ACTACAGCAGTAACTAATGTATACAATTTTATAATGATTGTTTGGAATCAAATAGTCGCT
    TATTTACAAGGGTTATGGAATGGAATTATCGCTATTGCAACAACGGTGTGGAACCTTTTA
    GTTACAATCATCACAACTGTTTTCACGACGATAATGACAATAGTTATGACGATATGGACA
    GCTATTTGGACATTCTTAAGTACAATCTGGAACACGATAATTACAATCGCTACTACGATT
    TGGAATTTGTTAGTCACTGTAATAACTACAGTGTTTACCACAATTATGACTATCGCAATG
    ACAATTTGGAACGCTATTTGGACGTTCTTACAAACGTTGTGGAACACTATAGTTACTGTG
    GCAACTAAGGTTTGGAACGCTATCACTACAGCTATATCTACTGCGTTACAAGCGGCATGG
    AGTTTTATTTCTAATATATGGAATACGATTTGGAGTTTCTTATCTGGTATATTAACGACA
    ATTTGGAATAAAGTTGTAAGCATATTCACACAAGTTGTATCAACTATATCAGACAAAATG
    TCTCAAGCTTGGAACTTCATCGTGACTAAAGGTATGCAATGGGTATCTACTATAACAAGT
    ACGCTAATTAACTTTGTTAATAGAGTTATTCAAGGATTCGTTAATGTTGTAAACAAAGTT
    AGTCAAGGTATGACAAATGCAGTAAATAAAATAAAAAGTTTTATAGGAGATTTTGTGTCT
    GCAGGTGCTGATATGATCCGTGGTTTAATTAGAGGTATTGGACAAATGGCTGGTCAATTA
    GTAGATGCAGCTAAAAATGTTGCTAAGAAAGCTTTAGATGCAGCTAAAAGTGCTTTGGGT
    ATTCACTCACCTTCACGTGAATTCATGGATGTTGGTATGTATTCAATGCTAGGTTTCGTT
    AAAGGTATAGATAATCATTCAAGTAAAGTTATCCGTAATGTTTCTAATGTTGCAGATAAA
    GTAGTTGATGCATTTCAACCTACATTAAACGCACCTGACATTTCTAGTATTACAGGAAAC
    TTAAGTAATTTAGGTGGAAATATAAATGCGCAAGTACAACACACACATTCTATTGAAACA
    TCACCGAACATGAAAACTGTTAAAGTTGAATTCGATGTCAATAACGATGCGCTTACTAGT
    ATTGTTAACGGCAGAAATGCTAAACGCAATTCTGAGTATTACTTATAA
    60
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    3468

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS10175 [old locus tag: NWMN_1780 ]
  • symbol: NWMN_RS10175
  • description: hypothetical protein
  • length: 1155
  • theoretical pI: 10.6692
  • theoretical MW: 125746
  • GRAVY: 0.325455

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED:
  • PFAM:
    no clan defined Ribosomal_L31e; Ribosomal protein L31e (PF01198; HMM-score: 14.2)
    and 3 more
    HTH (CL0123) DUF2316; Uncharacterized protein conserved in bacteria (DUF2316) (PF10078; HMM-score: 9.1)
    no clan defined KfrA_N; Plasmid replication region DNA-binding N-term (PF11740; HMM-score: 8.1)
    Syntaxin-6_N; Syntaxin 6, N-terminal (PF09177; HMM-score: 7.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 14
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00825
    • TAT(Tat/SPI): 0.000717
    • LIPO(Sec/SPII): 0.001614
  • predicted transmembrane helices (TMHMM): 13

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTEYKIKATIEASVAKFKKQIDSAVKSVQKFKRVADQTKDVELNANDKKLQKTIKVAKKSLDAFSNKNVKAKLDASIQDLQQKILESNFELDKLNSKEASPEVKLQKQKLTKDIAEAEAKLSELEKKRVNIDVNADNSKFNRVLKVSKASLEALNRSKAKAFIDVDNGVANSKIKRTKEELKSIPNKTRSRLEVDTGLSIPTIYAFKKSLDALPNKKTTKVDVDTNGLKKAYAYIIKANDNFQRQMGNLANMFRVFGTVGSNMVGGLLTSSFSILIPIIASVVPVVFALLNAIKVLTGGVLALGGAVAIAGAGFVAFGAMAISAIKMLNDGTLQASSATNEYKKALDGVKSAWTDIIKQNQSAIFTTLANGLNTVKTAMQSLQPFFSGISRGMEEASQSVLKWAQNSGVASRFFNMMNTTGVSVFNKLLSAAGGFGDGLVNVFTQLAPLFQWSADWLDRLGQSFSNWANSAAGENSITRFIEYTKTNLPIIGNIFKNVFVGINNLMNAFSGSSTGIFQSLEQMTAKFREWSEQVGQSQGFKDFVSYIQTNGPLIMQLIGNIARGLVAFATAMAPIASAVLRVAVAITGWIANLFEAHPATAQLVGVIITLVGAFRFLIPIILAVSNFMGGGLIGRIIALVSKFGLLRAGLTILKGAFMLLKGPLKIISVIFQLLFGKIGLIRNAITGLVTVFGILGGPITIVIGVIAALIAIFVLLWNKNEGFRNFIINAWNAIKTFMVTVWNVLKTVASVVWNAILKAITTAVTNVYNFIMIVWNQIVAYLQGLWNGIIAIATTVWNLLVTIITTVFTTIMTIVMTIWTAIWTFLSTIWNTIITIATTIWNLLVTVITTVFTTIMTIAMTIWNAIWTFLQTLWNTIVTVATKVWNAITTAISTALQAAWSFISNIWNTIWSFLSGILTTIWNKVVSIFTQVVSTISDKMSQAWNFIVTKGMQWVSTITSTLINFVNRVIQGFVNVVNKVSQGMTNAVNKIKSFIGDFVSAGADMIRGLIRGIGQMAGQLVDAAKNVAKKALDAAKSALGIHSPSREFMDVGMYSMLGFVKGIDNHSSKVIRNVSNVADKVVDAFQPTLNAPDISSITGNLSNLGGNINAQVQHTHSIETSPNMKTVKVEFDVNNDALTSIVNGRNAKRNSEYYL

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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