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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS10240 [old locus tag: NWMN_1792 ]
  • pan locus tag?: SAUPAN001743000
  • symbol: NWMN_RS10240
  • pan gene symbol?: —
  • synonym:
  • product: phage portal protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS10240 [old locus tag: NWMN_1792 ]
  • symbol: NWMN_RS10240
  • product: phage portal protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2003389..2004924
  • length: 1536
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (2003389..2004924) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1792

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGTTAAAAGTAAACGAATTTGAAACAGATACAGATCTACGGGGAAACATAAATTACTTA
    TTTAATGATGAAGCCAATGTTGTTTACACATATGACGGGACGGAATCCGATTTATTACAA
    AACGTTAATGAAGTAAGTAAATGCATTGAACATCACATGGATTACCAACGACCTAGATTG
    AAAGTGTTAAGTGATTATTACGAAGGTAAAACTAAGAACTTAGTTGAGTTAACACGACGC
    AAAGAAGAGTACATGGCAGATAACCGTGTAGCGCATGATTACGCATCTTATATTAGCGAT
    TTTATCAACGGCTATTTCTTGGGTAATCCAATTCAATATCAAGATGATGACAAAGATGTA
    TTAGAAGCTATTGAGGCATTCAATGATTTGAATGATGTTGAGTCACACAATAGATCTCTA
    GGATTAGACTTATCAATTTACGGTAAAGCTTATGAGATAATGATTAGAAACCAAGATGAT
    GAAACGCGTTTATACAAGAGTGATGCAATGAGTACTTTTGTCATATACGACAATACAATT
    GAACGTAATAGTATCGCAGGCGTTAGATATTTAAGAACTAAACCAATAGACAAGACTGAC
    GAAGATGAAGTGTTTACAGTTGATTTATTTACTTCTCACGGTGTTTATAGATATCTTACC
    AGTAGAACAAATGGATTGAAGCTCACACCACGTGAAAACGGTTTTGAATCACACTCTTTC
    GAACGTATGCCTATTACAGAATTTAGCAACAACGAAAGAAGAAAAGGGGATTATGAGAAA
    GTAATCACTTTAATTGATTTGTATGATAATGCTGAATCAGATACTGCTAACTATATGAGT
    GATTTAAATGACGCTATGTTACTTATTAAAGGTAATTTAAATTTAGATCCCGTAGAAGTT
    AGAAAACAAAAGGAAGCTAACGTGTTGTTTTTAGAACCGACTGTTTATGCTGATAGCGAA
    GGTAGAGAAACAGAAGGTTCAGTTGACGGTGGTTATATTTATAAGCAATACGATGTACAA
    GGTACCGAAGCTTATAAAGACCGTTTGAACAGTGATATACACATGTTTACCAACACGCCT
    AACATGAAAGATGATAACTTTAGTGGCACTCAATCGGGCGAGGCAATGAAATACAAATTA
    TTTGGATTGGAACAACGTACTAAAACTAAAGAAGGATTGTTTACTAAAGGGTTAAGACGT
    CGTGCTAAGTTGTTAGAGACAATACTTAAAAATACACGGTCGATTGACGCTAACAAAGAT
    TTCAATACTGTTAGATACGTATACAACAGAAACTTACCTAAATCATTGATTGAAGAATTA
    AAAGCTTATATTGATTCTGGCGGGAAGATTAGCCAAACAACTTTAATGTCTCTATTCTCG
    TTCTTCCAAGACCCTGAATTAGAAGTTAAGAAAATCGAAGAAGATGAGAAAGAATCTATT
    AAAAAAGCTCAAAAAGGTATTTATAAAGACCCTAGAGACATCAATGATGACGAACAAGAT
    GATGATACAAAAGATACTGTTGATAAAAAGGAATGA
    60
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    240
    300
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    1140
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    1260
    1320
    1380
    1440
    1500
    1536

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS10240 [old locus tag: NWMN_1792 ]
  • symbol: NWMN_RS10240
  • description: phage portal protein
  • length: 511
  • theoretical pI: 4.54398
  • theoretical MW: 59345.4
  • GRAVY: -0.851076

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage portal protein, SPP1 family (TIGR01538; HMM-score: 343.6)
  • TheSEED:
  • PFAM:
    no clan defined Phage_prot_Gp6; Phage portal protein, SPP1 Gp6-like (PF05133; HMM-score: 374.8)
    and 1 more
    GCK; GCK domain (PF07802; HMM-score: 12.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008224
    • TAT(Tat/SPI): 0.000465
    • LIPO(Sec/SPII): 0.002545
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKCIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYEIMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDTVDKKE

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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