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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS11000 [old locus tag: NWMN_1908 ]
  • pan locus tag?: SAUPAN001394000
  • symbol: NWMN_RS11000
  • pan gene symbol?: dnaD2
  • synonym:
  • product: replication protein DnaD

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS11000 [old locus tag: NWMN_1908 ]
  • symbol: NWMN_RS11000
  • product: replication protein DnaD
  • replicon: chromosome
  • strand: -
  • coordinates: 2118960..2119844
  • length: 885
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_009641 (2118960..2119844) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1908

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
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    481
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    841
    ATGACTGGTTGGATAAAACTTCATAGAAAACTATTAGATTCGCCTATTTTTCAGAACGAA
    AAGTTATTCAAAGTATTTGCATATTGTCTTATGAAGGCTAGTCATAAGGATCATACACAG
    CTTGTTGGCAGACGAGTTGTTGAATTAGAAAAAGGTCAATTTGTGTTCGGGAGAAAGCGA
    GCAAGCGAAGAGTTACGTCTCAAAGAATCCACAGTAAGAGACTACATAAAGCTTTTAGAA
    AACCTTGGAACTATCGTCGTAAAGTCCGACAACAAATTTTCTGTTATAACCGTTGTCAAT
    TGGGCGATTTATCAAAGTATGGAAGAAAATTCCGACAGCAAAAACGACAACAAATCAACA
    ACAAATCAACAACAAATGGACAACAAATGGACAACAAATCAACAACAAATCAACACAAAC
    AAGAATGTAAAGAATGGGGATAATGTAAAGAATGGTGAGAATGAGAAGAAGAAGGTAACC
    GCCTTCGACTTCTTCCAAGATAACGGATTCGGTTTCATAACTCCTTACAATTTAGACGAT
    TTAAATTATTATCTTGATTCATTTGAAAATGATTCAGATCAAATAGTTACCGCATCACTT
    AAAATCGCTAAAGACAGAAATAAAGTTACTTGGGGATATGCTAAAAGCATTTTGAATACA
    TGGCTTAATGCAAACTTGAAATCTATTGAACAAGTACGTGCATTTGAAAAGCAACAACTT
    GAAAGCAAAAAACAAAATTATAAACCTTTCGTTAAACAATCAAAAGAAAAAACACCCAAA
    TGGCTCACAGACAGCACGAGAGAAACGAAAACGCCGGAAGTAGATGAAAACCTTGAGAAA
    GACAGAGAAGCTTTTATTAAGCGTCTAAATAGCAAATGGGAGTGA
    60
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Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_RS11000 [old locus tag: NWMN_1908 ]
  • symbol: NWMN_RS11000
  • description: replication protein DnaD
  • length: 294
  • theoretical pI: 9.87814
  • theoretical MW: 34490.7
  • GRAVY: -0.928912

Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DnaD domain protein (TIGR01446; HMM-score: 79.3)
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions DnaD domain protein (TIGR01446; HMM-score: 79.3)
  • TheSEED: data available for USA300_FPR3757
  • PFAM:
    no clan defined DnaB_2; Replication initiation and membrane attachment (PF07261; HMM-score: 48.9)
    and 4 more
    HTH (CL0123) Phage_rep_org_N; N-terminal phage replisome organiser (Phage_rep_org_N) (PF09681; HMM-score: 17.4)
    Met_repress (CL0057) DndE; DNA sulphur modification protein DndE (PF08870; HMM-score: 15.3)
    HTH (CL0123) HTH_29; Winged helix-turn helix (PF13551; HMM-score: 12.5)
    no clan defined Ribosomal_S17_N; Ribosomal_S17 N-terminal (PF16205; HMM-score: 8.8)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002388
    • TAT(Tat/SPI): 0.00029
    • LIPO(Sec/SPII): 0.000595
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MTGWIKLHRKLLDSPIFQNEKLFKVFAYCLMKASHKDHTQLVGRRVVELEKGQFVFGRKRASEELRLKESTVRDYIKLLENLGTIVVKSDNKFSVITVVNWAIYQSMEENSDSKNDNKSTTNQQQMDNKWTTNQQQINTNKNVKNGDNVKNGENEKKKVTAFDFFQDNGFGFITPYNLDDLNYYLDSFENDSDQIVTASLKIAKDRNKVTWGYAKSILNTWLNANLKSIEQVRAFEKQQLESKKQNYKPFVKQSKEKTPKWLTDSTRETKTPEVDENLEKDREAFIKRLNSKWE

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]