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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS12800
  • pan locus tag?:
  • symbol: NWMN_RS12800
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS12800
  • symbol: NWMN_RS12800
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2441495..2441680
  • length: 186
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_009641 (2441495..2441680) NCBI
  • BioCyc:
  • MicrobesOnline:

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    ATGACAACAGCATTAATTGGTGTAATTGTATTAATCTTACTAATTATTAGCTTTGTGCCA
    AACTACCGTGCTATGAAATCAGCAAAAGAACAAGGAAGTAATGCAACAAGAGCTACAATT
    ATGGTAGGCATAGATATTATCTTAATTGTACTTATCATCGTGACGTTATTATTAAAATAT
    ATGTAA
    60
    120
    180
    186

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_RS12800
  • symbol: NWMN_RS12800
  • description: hypothetical protein
  • length: 61
  • theoretical pI: 10.3246
  • theoretical MW: 6675.29
  • GRAVY: 1.36557

Function[edit | edit source]

  • TIGRFAM:
    variant surface antigen, rifin family (TIGR01477; HMM-score: 5.9)
  • TheSEED:
  • PFAM:
    no clan defined DUF3149; Protein of unknown function (DUF3149) (PF11346; HMM-score: 11.3)
    Omega_toxin (CL0083) Chi-conotoxin; chi-Conotoxin or t superfamily (PF16981; HMM-score: 10.3)
    no clan defined P12; Virus attachment protein p12 family (PF12669; HMM-score: 9.6)
    OppC_N; N-terminal TM domain of oligopeptide transport permease C (PF12911; HMM-score: 9.2)
    and 3 more
    Adeno_E3_CR2; Adenovirus E3 region protein CR2 (PF02439; HMM-score: 9)
    Zn_Beta_Ribbon (CL0167) DUF2116; Uncharacterized protein containing a Zn-ribbon (DUF2116) (PF09889; HMM-score: 7.3)
    VSA (CL0656) RIFIN; Rifin (PF02009; HMM-score: 6.3)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.054124
    • TAT(Tat/SPI): 0.000861
    • LIPO(Sec/SPII): 0.059842
  • predicted transmembrane helices (TMHMM): 2

Accession numbers[edit | edit source]

  • GI: 446127452 NCBI
  • RefSeq: WP_000205307 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MTTALIGVIVLILLIISFVPNYRAMKSAKEQGSNATRATIMVGIDIILIVLIIVTLLLKYM

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]