From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS12955 [old locus tag: NWMN_2250 ]
  • pan locus tag?: SAUPAN005848000
  • symbol: NWMN_RS12955
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS12955 [old locus tag: NWMN_2250 ]
  • symbol: NWMN_RS12955
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2472148..2472567
  • length: 420
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (2472148..2472567) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_2250

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGACAGATGCATTACAACAAAAGATTCATATCGAATTACTAGATTTATTAGATGATGTT
    AAGTTTGAATTAACAGAATTAAATGCACAAAAAGGGTTATACATTAACGGACCAGCAAAT
    CAGCTACTTAAGCGTGGCGTGCATATGGCTTATGTTCAAGGACAAAAGCAAGCCATCGAT
    AATATTATGACTATTGTGGAACAACAGCTTGAAGATCAACATTTCCTAGAACATTATGAT
    AAATTTCAAAATGAGGTTGCTCATCGCAATTATGATAAAACAGCTAACTTTGCAGAACTT
    AGTGATATTCCACGTCAATTCGATAATTTTTTAGATCAATTTTATCAAATTAAAGGGCAA
    TACTTTATCATCACACATATCAATACACTTATTGGTGATTTTCACTCAGAAGCTCATTAA
    60
    120
    180
    240
    300
    360
    420

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS12955 [old locus tag: NWMN_2250 ]
  • symbol: NWMN_RS12955
  • description: hypothetical protein
  • length: 139
  • theoretical pI: 4.93371
  • theoretical MW: 16306.2
  • GRAVY: -0.488489

⊟Function[edit | edit source]

  • TIGRFAM:
    formate dehydrogenase, alpha subunit (TIGR01591; EC 1.2.1.2; HMM-score: 12.7)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    no clan defined LMP; LMP repeated region (PF04778; HMM-score: 14.4)
    DUF3567; Protein of unknown function (DUF3567) (PF12091; HMM-score: 14.1)
    COOH-NH2_lig; Phage phiEco32-like COOH.NH2 ligase-type 2 (PF14395; HMM-score: 12.8)
    PRP9_N; Pre-mRNA-splicing factor PRP9 N-terminus (PF16958; HMM-score: 12.1)
    MSP7_C; MSP7-like protein C-terminal domain (PF12948; HMM-score: 12)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001597
    • TAT(Tat/SPI): 0.00016
    • LIPO(Sec/SPII): 0.000179
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTDALQQKIHIELLDLLDDVKFELTELNAQKGLYINGPANQLLKRGVHMAYVQGQKQAIDNIMTIVEQQLEDQHFLEHYDKFQNEVAHRNYDKTANFAELSDIPRQFDNFLDQFYQIKGQYFIITHINTLIGDFHSEAH

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=NWMN_RS12955&oldid=62769"