From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS13460 [old locus tag: NWMN_2338 ]
  • pan locus tag?: SAUPAN005988000
  • symbol: NWMN_RS13460
  • pan gene symbol?: —
  • synonym:
  • product: sodium:proton antiporter

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS13460 [old locus tag: NWMN_2338 ]
  • symbol: NWMN_RS13460
  • product: sodium:proton antiporter
  • replicon: chromosome
  • strand: +
  • coordinates: 2568658..2570736
  • length: 2079
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (2568658..2570736) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_2338

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    ATGGCACTATTAGAAGCATTTTTAATTTTTATTTTTGCTGTGATTATTAGTTCGGTTATC
    AATAATCGATTCCCACAAATTCCTACTGCCTTTATTCAAATTGCATTAGGTGTCGTTATT
    TTCATTATTCCAATACAAGTTGATTTCCAATTCAATTCTGAAGTATTTATGTTTGCCGTT
    ATCGCGCCACTACTTTTTGTGGAAGGTACCCACGTCTCTCGAACAAAATTATTAGAATAT
    CGTAAACCTATACTATTAATGTCAATGGCACTAGTGTTTGCAACTGTAGTCGGTGTTGGC
    TATTTTATACATTGGATTTGGCCTGCCTTACCAATGCCAGCCGCTTTTGCAATAGCAGCA
    ATTTTATGTCCTACTGATGCAGTAGCAGTATCTGCTATTACACGCGGAAAATTATTACCT
    AAAGGTTCTATGACGATTTTAGAAGGTGAATCTTTACTCAATGATGCAGCAGGTATCATT
    TCATTTAAAATTGCTGTTACTGCATTAGTAACTGGTACCTTTTCATTATTCCAAGCTGTT
    GAACAATTTATCATTTCAACAATACTAGGTGTACTTATTGGTGCAATTATTGGATTCGTT
    GTCGTTAGAATACGTATAGACTTAACCGCTAATAAAGGTTTAAAAGATAACAATACCTTA
    ACTTTTATTCAATTATTAACTCCTTTTGTCGTATACTTTTTAGCAGAAGAAGTTCATGCT
    TCAGGTATCATTGCAGTTGTAATCGCAGGTCTAATCCATGGTTTAGAACGCGACCGTTTA
    ATTAGAGCACAAACGGAACTACAAATGAATTACCATCAAATTTGGAACACATTTAGTTAT
    GCCTTAAATGGTTTTGTATTTGTTGTATTAGGTTTTATGATTCCTACTGTAGTCATAGAT
    ATTTTCCAAACAGAGCCTGACAACTTTTCATTTTTAATAGTGATCACTATATTAATCGCT
    ATTGCAATTTATGCATGTCGATTTGTTTGGGTTTATTTCTGGTACAAAGATTTTTATTTC
    CCGAAAAATATACAATCTTATCTAGACGAGGAACATGATTCACATGAAACACCACCTTCT
    CGAGTGCGTTACGCATTTATTATGACCATGTGTGGTATTCACGGTACAATTTCACTTTCA
    ATGGCACTTACATTACCATTTATCATTACAAAAGGACAAGCATTCGAATACCGTAATGAT
    TTATTGTTTATTGCATCTTTCATGGTATTAATTAGTTTAATCTTAGCGCAAATTGTTTTA
    CCTTTAATTACACCATCTGCCGAAGATACTACTTTTAAAGGTATGACTTATCAATCTGCC
    AAAATTTTCATTGTTCAAAAAGTGATCCAGCATTTTAAAAACGAAAGTAAAAAAGACAAA
    AACGATACAAATTATCGCCCAGTATTAAACCAATACTATGGAGAATTGTTATTTTTATTA
    AATTCAGAACCTGATAATCAAAATACAAAAGAACTCAAACGTTTAGAAGATATTGCAAAA
    GTAATCGAAACATCTACACTTGAGCGTTTAATTGATAAAGGTAAGGCAACATATCAGGAT
    ATTAATAATTACCGCAATATTGGCGAATTAACAGAAACCCCCCGTACTGCATCATTTGGT
    GAAAAATTTGCAAACTTCTTCCAGATGTTATGGCTTAAACTTAAAGCGATGAAGCACTAC
    AAAGCCTTAAATAAAGAATCTAAGAAGCAAGAATTTGAAAATTCATTCAAAGATGTTCAA
    AAAATTATGCGTATTGTGAATCACAATATTATTTTACGCTTAAAAGAAGAACAAAATAGT
    ACAAATGTACTTGAGGTTAGCTTAGTCATTAATCATTACTATGATATGAGTCGCTCATTA
    AAGTGGCGTGCACAACGTCGAAAAGAACGTCAAGAAAACAGCAATCAAATCATACCGCAA
    GCTATGTTCCATAACCACAAATTGGAAGCATTGTACTTACAACGTCATCTTTTAGATGAA
    TTAATTCGCAAAAATAAAATCAACAATATCGTTGCAGCTCAAATTCGAGAAAATATCAAT
    TACAACGAAATTGTCTTGTCTTTACAGTCCAAACATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2079

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS13460 [old locus tag: NWMN_2338 ]
  • symbol: NWMN_RS13460
  • description: sodium:proton antiporter
  • length: 692
  • theoretical pI: 9.10234
  • theoretical MW: 79187.3
  • GRAVY: 0.267197

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds Na+/H+ antiporter (TIGR00831; HMM-score: 250.5)
    and 1 more
    Metabolism Transport and binding proteins Cations and iron carrying compounds sodium/hydrogen exchanger 3 (TIGR00840; HMM-score: 56.7)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    CPA_AT (CL0064) Na_H_Exchanger; Sodium/hydrogen exchanger family (PF00999; HMM-score: 173.8)
    and 3 more
    no clan defined DUF2157; Predicted membrane protein (DUF2157) (PF09925; HMM-score: 16.5)
    DUF3139; Protein of unknown function (DUF3139) (PF11337; HMM-score: 12.9)
    Phage_holin_3_6; Putative Actinobacterial Holin-X, holin superfamily III (PF07332; HMM-score: 10.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009404
    • TAT(Tat/SPI): 0.000478
    • LIPO(Sec/SPII): 0.07681
  • predicted transmembrane helices (TMHMM): 12

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MALLEAFLIFIFAVIISSVINNRFPQIPTAFIQIALGVVIFIIPIQVDFQFNSEVFMFAVIAPLLFVEGTHVSRTKLLEYRKPILLMSMALVFATVVGVGYFIHWIWPALPMPAAFAIAAILCPTDAVAVSAITRGKLLPKGSMTILEGESLLNDAAGIISFKIAVTALVTGTFSLFQAVEQFIISTILGVLIGAIIGFVVVRIRIDLTANKGLKDNNTLTFIQLLTPFVVYFLAEEVHASGIIAVVIAGLIHGLERDRLIRAQTELQMNYHQIWNTFSYALNGFVFVVLGFMIPTVVIDIFQTEPDNFSFLIVITILIAIAIYACRFVWVYFWYKDFYFPKNIQSYLDEEHDSHETPPSRVRYAFIMTMCGIHGTISLSMALTLPFIITKGQAFEYRNDLLFIASFMVLISLILAQIVLPLITPSAEDTTFKGMTYQSAKIFIVQKVIQHFKNESKKDKNDTNYRPVLNQYYGELLFLLNSEPDNQNTKELKRLEDIAKVIETSTLERLIDKGKATYQDINNYRNIGELTETPRTASFGEKFANFFQMLWLKLKAMKHYKALNKESKKQEFENSFKDVQKIMRIVNHNIILRLKEEQNSTNVLEVSLVINHYYDMSRSLKWRAQRRKERQENSNQIIPQAMFHNHKLEALYLQRHLLDELIRKNKINNIVAAQIRENINYNEIVLSLQSKH

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=NWMN_RS13460&oldid=91339"