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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS14865 [old locus tag: NWMN_2593 ]
  • pan locus tag?: SAUPAN006457000
  • symbol: NWMN_RS14865
  • pan gene symbol?: rarD
  • synonym:
  • product: protein RarD

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS14865 [old locus tag: NWMN_2593 ]
  • symbol: NWMN_RS14865
  • product: protein RarD
  • replicon: chromosome
  • strand: -
  • coordinates: 2860669..2861577
  • length: 909
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (2860669..2861577) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_2593

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    GTGAATTCAGAGTATAAAAAAGGCATATTTTTAGCACTCAGTGCATACATTCTGTGGGGA
    ATACTACCTATATATTGGCAGTTCGTTGATGCAATAGGCGCATTTGAAATTTTAGCCTTT
    CGTATTATATTTTCAGCAATATTCATGATTTTCATACTCGCGGTTGGACAAAAACAACGC
    AATGCATTTCAACGAGATATGAATCAATTGTTAGGCAAGCCCATTCAGCTATTAGCGATT
    GTCGTAGCAGGCTATGTCATTACATTAAATTGGGGTACATTTATTTGGGCTGTAACGAAC
    GGTCACGTCCTACAAACAAGTTTAGGTTATTATATAAATCCACTTGTTAGCATTTTGCTC
    GCACTTATCTTTTTAAAAGAAAGATTCAATAAATTTGAATGGCTAGCCATTTTATTCGCA
    TTCATCGGTGTATTATATATGACGCTCAAGATTGGAGAATTCCCAATCGTCTCTATTATA
    TTAGCGTTATCCTTTGGTACATACGGATTATTGAAAAAAGTAGTACATATTGATGCCATC
    AGCAGTATTACGATTGAATGTATTGTTACCGCACCTGCTGGACTAATATACGTTATTTAT
    TTATGGCAGCAACATCAGATGTCATTTGGATTGAACATGTCATCATTTTGGTTGTTATTT
    TCTGGTGCTATTACGGCAATACCACTAATCCTATTCTCAGCCGGGGCAAAACGTATTCCA
    CTTTCGCTAATAGGATTTATTCAATACGTTGGACCAACAATAATGTTTGTACTCGGCATA
    TTTGTTTTCAAAGAGCCTTTTAGTATAGATCAATTAATTACGTTTATATTTATTTGGACA
    GGTATTGTGTTATATAGTCTTTCTCAATACATTAAATTGAAGAAACATCCGGTCGCAAAA
    ACCCTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    909


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS14865 [old locus tag: NWMN_2593 ]
  • symbol: NWMN_RS14865
  • description: protein RarD
  • length: 302
  • theoretical pI: 9.93378
  • theoretical MW: 34119.9
  • GRAVY: 0.97053

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Unknown substrate protein RarD (TIGR00688; HMM-score: 210.5)
    and 1 more
    Metabolism Transport and binding proteins Amino acids, peptides and amines carboxylate/amino acid/amine transporter (TIGR00950; HMM-score: 38)
  • TheSEED: see NWMN_2593
  • PFAM:
    DMT (CL0184) EamA; EamA-like transporter family (PF00892; HMM-score: 97)
    and 1 more
    no clan defined RseC_MucC; Positive regulator of sigma(E), RseC/MucC (PF04246; HMM-score: 8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 1
    • Cell wall & surface Score: 0
    • Extracellular Score: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006054
    • TAT(Tat/SPI): 0.000451
    • LIPO(Sec/SPII): 0.002399
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNSEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSAIFMIFILAVGQKQRNAFQRDMNQLLGKPIQLLAIVVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILLALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSIILALSFGTYGLLKKVVHIDAISSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIPLSLIGFIQYVGPTIMFVLGIFVFKEPFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAKTL

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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