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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA0197 [new locus tag: SA_RS01165 ]
- pan locus tag?: SAUPAN001052000
- symbol: SA0197
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA0197 [new locus tag: SA_RS01165 ]
- symbol: SA0197
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 231750..232472
- length: 723
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 1122973 NCBI
- RefSeq: NP_373440 NCBI
- BioCyc: see SA_RS01165
- MicrobesOnline: 102466 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721ATGCTAGTTTTAAATAATCTTCAAAAAAAATTTACTAATTCAAAAATGGTTTTGAATAAT
GTGAATGCTAAGTTTAGAAGTGGGAGCATCAATTGCATAGTGGGAGTAAATGGGGCAGGT
AAAACGACTTTGTTAAATATTATTAGTAGTATATTGATGCCAACAAAAGGTGATGTATAT
TTAAATAGTGAAAGTATTTTTGAAAATAGCACACTAAAAAAAGAGATTTTTTACACACCA
GTAAATCCCTTTTTTTATGAAAATTTAAGTGCTAAAGATAATTTGTACTTAATATGTAGC
CTATATAATCGGAAAATAGATCAAATAACTATTGAGAAAACTATTAAAGATGTAGGTTTG
AATATAGAAGATCTAAATATACCTGTATATAATTTTTCAAGTGGTATGAAGCAAAAACTA
AATTTTGCTTCTATGTTATTAGTAGATTCAAATGTTTTATTATTAGATGAACCATTTAAT
GCCCTTGACCATGTTGCTCAAAAAAATTTCACACGAATTTTAAAGGGATTAGTTTCTAAA
GAAAAGATAATAATTTTCACTAGTCATTTGCCTAATACAATTTTAGAACTCTCAGAAAAT
ATTTATTTGTTAAAAGATGGATGTTTTACAGATAAACGAAAAGCACAGTCATTTAATCAA
ACCACGTTAGAAACATGGTTGTTAGAAAGTCAAAAAGAGGTGATACCTTATGAAGAAAAA
TGA60
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723
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA0197 [new locus tag: SA_RS01165 ]
- symbol: SA0197
- description: hypothetical protein
- length: 240
- theoretical pI: 8.42175
- theoretical MW: 27319.5
- GRAVY: -0.102083
⊟Function[edit | edit source]
- TIGRFAM: lantibiotic protection ABC transporter, ATP-binding subunit (TIGR03740; HMM-score: 123.2)Transport and binding proteins Other daunorubicin resistance ABC transporter, ATP-binding protein (TIGR01188; HMM-score: 109.7)Protein fate Protein and peptide secretion and trafficking heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 106.5)Transport and binding proteins Other heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 106.5)Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04521; EC 3.6.3.-; HMM-score: 105)Cellular processes Toxin production and resistance putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 104.8)Transport and binding proteins Unknown substrate putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 104.8)and 69 moregliding motility-associated ABC transporter ATP-binding subunit GldA (TIGR03522; HMM-score: 95.3)Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 94.9)Transport and binding proteins Other LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 94.9)Transport and binding proteins Other pigment precursor permease (TIGR00955; HMM-score: 87.3)Protein fate Protein and peptide secretion and trafficking ABC-type bacteriocin transporter (TIGR01193; HMM-score: 83.8)Protein fate Protein modification and repair ABC-type bacteriocin transporter (TIGR01193; HMM-score: 83.8)Transport and binding proteins Other ABC-type bacteriocin transporter (TIGR01193; HMM-score: 83.8)thiol reductant ABC exporter, CydD subunit (TIGR02857; HMM-score: 83.7)Transport and binding proteins Anions sulfate ABC transporter, ATP-binding protein (TIGR00968; EC 3.6.3.25; HMM-score: 83.2)Transport and binding proteins Anions phosphonate ABC transporter, ATP-binding protein (TIGR02315; EC 3.6.3.28; HMM-score: 82.4)Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04520; EC 3.6.3.-; HMM-score: 81.9)Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtD (TIGR03411; HMM-score: 81.3)Transport and binding proteins Anions nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 80.6)Transport and binding proteins Other nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 80.6)Transport and binding proteins Anions molybdate ABC transporter, ATP-binding protein (TIGR02142; EC 3.6.3.29; HMM-score: 78.4)Transport and binding proteins Amino acids, peptides and amines glycine betaine/L-proline transport ATP binding subunit (TIGR01186; HMM-score: 78.3)Cellular processes Pathogenesis type I secretion system ATPase (TIGR03375; HMM-score: 77.2)Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR03375; HMM-score: 77.2)Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtE (TIGR03410; HMM-score: 77.1)Cellular processes Cell division cell division ATP-binding protein FtsE (TIGR02673; HMM-score: 76.2)Transport and binding proteins Anions phosphate ABC transporter, ATP-binding protein (TIGR00972; EC 3.6.3.27; HMM-score: 75)thiol reductant ABC exporter, CydC subunit (TIGR02868; HMM-score: 74.6)Transport and binding proteins Other thiamine ABC transporter, ATP-binding protein (TIGR01277; EC 3.6.3.-; HMM-score: 74.2)Transport and binding proteins Carbohydrates, organic alcohols, and acids ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system (TIGR03864; HMM-score: 73.4)Transport and binding proteins Cations and iron carrying compounds cobalt ABC transporter, ATP-binding protein (TIGR01166; HMM-score: 73.2)Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TIGR03265; HMM-score: 69.9)proposed F420-0 ABC transporter, ATP-binding protein (TIGR03873; HMM-score: 68.9)2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT (TIGR03258; HMM-score: 67.3)Cellular processes Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 65.7)Transport and binding proteins Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 65.7)Transport and binding proteins Carbohydrates, organic alcohols, and acids D-xylose ABC transporter, ATP-binding protein (TIGR02633; EC 3.6.3.17; HMM-score: 64.8)ABC exporter ATP-binding subunit, DevA family (TIGR02982; HMM-score: 64.4)Transport and binding proteins Unknown substrate anchored repeat-type ABC transporter, ATP-binding subunit (TIGR03771; HMM-score: 63.4)Transport and binding proteins Other rim ABC transporter (TIGR01257; HMM-score: 61)Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikD (TIGR02770; HMM-score: 60.5)Protein fate Protein and peptide secretion and trafficking lipoprotein releasing system, ATP-binding protein (TIGR02211; EC 3.6.3.-; HMM-score: 59.2)Energy metabolism Methanogenesis methyl coenzyme M reductase system, component A2 (TIGR03269; HMM-score: 58.1)Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01842; HMM-score: 57.9)Transport and binding proteins Amino acids, peptides and amines choline ABC transporter, ATP-binding protein (TIGR03415; HMM-score: 57.6)Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikE (TIGR02769; EC 3.6.3.24; HMM-score: 56.1)ATP-binding cassette protein, ChvD family (TIGR03719; HMM-score: 55.5)Transport and binding proteins Other antigen peptide transporter 2 (TIGR00958; HMM-score: 53.9)ABC transporter, permease/ATP-binding protein (TIGR02204; HMM-score: 53.8)Transport and binding proteins Amino acids, peptides and amines polyamine ABC transporter, ATP-binding protein (TIGR01187; EC 3.6.3.31; HMM-score: 53.3)Biosynthesis of cofactors, prosthetic groups, and carriers Other FeS assembly ATPase SufC (TIGR01978; HMM-score: 51.6)Central intermediary metabolism Phosphorus compounds phosphonate C-P lyase system protein PhnK (TIGR02323; HMM-score: 51.3)Transport and binding proteins Amino acids, peptides and amines cyclic peptide transporter (TIGR01194; HMM-score: 50.5)Transport and binding proteins Other cyclic peptide transporter (TIGR01194; HMM-score: 50.5)phosphonate C-P lyase system protein PhnL (TIGR02324; HMM-score: 48.8)D-methionine ABC transporter, ATP-binding protein (TIGR02314; EC 3.6.3.-; HMM-score: 48.3)Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01846; HMM-score: 47.8)Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 46.7)Transport and binding proteins Other lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 46.7)Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 46)Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 46)Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 41.2)Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 41.2)Transport and binding proteins Carbohydrates, organic alcohols, and acids glucan exporter ATP-binding protein (TIGR01192; EC 3.6.3.42; HMM-score: 39.5)ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA (TIGR03005; HMM-score: 37.6)Transport and binding proteins Other pleiotropic drug resistance family protein (TIGR00956; HMM-score: 36.7)Transport and binding proteins Anions cystic fibrosis transmembrane conductor regulator (CFTR) (TIGR01271; EC 3.6.3.49; HMM-score: 35.1)Transport and binding proteins Other multi drug resistance-associated protein (MRP) (TIGR00957; HMM-score: 25.8)Transport and binding proteins Carbohydrates, organic alcohols, and acids peroxysomal long chain fatty acyl transporter (TIGR00954; HMM-score: 24.2)DNA metabolism DNA replication, recombination, and repair excinuclease ABC subunit A (TIGR00630; EC 3.1.25.-; HMM-score: 23.6)DNA metabolism DNA replication, recombination, and repair exonuclease SbcC (TIGR00618; HMM-score: 19.9)Protein fate Protein and peptide secretion and trafficking signal recognition particle-docking protein FtsY (TIGR00064; HMM-score: 17.9)restriction system-associated AAA family ATPase (TIGR04435; HMM-score: 16.1)Purines, pyrimidines, nucleosides, and nucleotides Nucleotide and nucleoside interconversions dTMP kinase (TIGR00041; EC 2.7.4.9; HMM-score: 15.6)DNA metabolism DNA replication, recombination, and repair DNA replication and repair protein RecF (TIGR00611; HMM-score: 12.5)
- TheSEED :
- ABC transporter, ATP-binding protein
- PFAM: P-loop_NTPase (CL0023) ABC_tran; ABC transporter (PF00005; HMM-score: 89.5)and 17 moreAAA_21; AAA domain, putative AbiEii toxin, Type IV TA system (PF13304; HMM-score: 58.8)AAA_23; AAA domain (PF13476; HMM-score: 29.1)AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 24.4)AAA_15; AAA ATPase domain (PF13175; HMM-score: 21.9)SMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 21.8)AAA_13; AAA domain (PF13166; HMM-score: 19.7)AAA_14; AAA domain (PF13173; HMM-score: 19.6)RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 19.2)AAA_18; AAA domain (PF13238; HMM-score: 17.7)AAA_30; AAA domain (PF13604; HMM-score: 14.5)SRP54; SRP54-type protein, GTPase domain (PF00448; HMM-score: 13.4)NACHT; NACHT domain (PF05729; HMM-score: 12.5)AAA_27; AAA domain (PF13514; HMM-score: 12.4)Thymidylate_kin; Thymidylate kinase (PF02223; HMM-score: 12.2)cobW; CobW/HypB/UreG, nucleotide-binding domain (PF02492; HMM-score: 11.6)T2SSE; Type II/IV secretion system protein (PF00437; HMM-score: 10.8)DUF3584; Protein of unknown function (DUF3584) (PF12128; HMM-score: 10)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.17
- Cytoplasmic Membrane Score: 9.51
- Cellwall Score: 0.16
- Extracellular Score: 0.15
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.067316
- TAT(Tat/SPI): 0.000719
- LIPO(Sec/SPII): 0.004814
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MLVLNNLQKKFTNSKMVLNNVNAKFRSGSINCIVGVNGAGKTTLLNIISSILMPTKGDVYLNSESIFENSTLKKEIFYTPVNPFFYENLSAKDNLYLICSLYNRKIDQITIEKTIKDVGLNIEDLNIPVYNFSSGMKQKLNFASMLLVDSNVLLLDEPFNALDHVAQKNFTRILKGLVSKEKIIIFTSHLPNTILELSENIYLLKDGCFTDKRKAQSFNQTTLETWLLESQKEVIPYEEK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SA0196 > SA0197 > SAS006
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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