From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0318 [new locus tag: SA_RS01830 ]
  • pan locus tag?: SAUPAN001863000
  • symbol: ulaA
  • pan gene symbol?: ulaA
  • synonym:
  • product: PTS system ascorbate-specific transporter subunit IIC

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0318 [new locus tag: SA_RS01830 ]
  • symbol: ulaA
  • product: PTS system ascorbate-specific transporter subunit IIC
  • replicon: chromosome
  • strand: -
  • coordinates: 375713..377059
  • length: 1347
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGCAAGCAATCCTTAATTTTATAGTCGATATTTTAAGTCAACCAGCCATTCTTGTTGCA
    CTGATTGCCTTTATAGGTTTAATCGTTCAGAAAAAACCTGCCGCAACGATCACTTCAGGA
    ACCATTAAAACGATATTAGGCTTCTTAATTTTAAGTGCAGGTGCTGATGTCGTCGTTCGA
    TCTCTTGAACCATTCGGCAAAATATTCCAACACGCATTTGGTGTGCAAGGTATCGTACCT
    AACAACGAAGCTATCGTCTCACTAGCCTTAAAAGATTTTGGAACAACAGCTGCACTCATC
    ATGGTCTGTGGCATGATTGTTAATATTTTAATTGCTCGCTTCACTAATTTAAAATATATC
    TTTTTAACAGGTCATCATACATTTTACATGGCTGCGTTTTTAGCAATCATTTTAACAGTC
    AGTCATATTAAAGGCTGGCTAACAATTGTTATCGGCGCACTCGTATTAGGATTAATCATG
    GCAGTATTACCTGCATTACTCCAACCTACGATGCGAAAAATTACAGGGAATGACCAAGTA
    GCGTTAGGTCATTTTGGCTCAATCAGTTACTTTGCCGCAGGTGCTGTAGGTCAATTATTC
    AAAGGTAAGTCTAAATCAACGGAAGAGATTAAATTTCCAAAAGGCTTAAGTTTCTTACGA
    GAAAGTACAATTAGTATCTCGATTACAATGGCATTACTTTACTTCATCGCATGCTTATTT
    GCGGGCGTTAGTTATGTACACGAATCTATTAGTGATGGTCAAAACTTTATTGTCTTTTCT
    TTAATTCAAGGTGTGACATTTGCTGCTGGTGTATTTATTATTTTAACGGGCGTTCGTTTA
    ATCTTAGCTGAAATCGTCCCAGCATTTAAAGGAATTTCTGAAAAGCTTGTACCAAATTCT
    AAACCTGCATTAGACTGCCCTATTGTGTTCCCTTATGCACAAAATGCAGTATTAATTGGA
    TTCTTTGTCAGCTTTATTACAGGTGTCATCGGTATGTTTATCTTATTCTTATTTGGTGGC
    GTCGTCATTTTACCTGGCGTAGTTGCACACTTCTTCTTAGGTGCAACGGCTGCTGTATTC
    GGTAATGCAAGAGGCGGTATTAAAGGTGCTGTTGCTGGCGCCGCTCTAAATGGTATCCTA
    ATCACGTTTTTACCATTATTATTCTTGCCATTTTTAGGCGAATTAGGTGGTGCTGCAACA
    ACATTCTCAGATACAGACTTTTTAACTGTCGGTATCGTGTTCGGTAACGCAGTAAAATAT
    ATGGGATTATTTGGTGCGATTCTATTTATTATTATCGTAGGTGCGACAGCAATTTTATTA
    AAAGGCCGTCAAAAGCCACAGCAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1347

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0318 [new locus tag: SA_RS01830 ]
  • symbol: UlaA
  • description: PTS system ascorbate-specific transporter subunit IIC
  • length: 448
  • theoretical pI: 10.0278
  • theoretical MW: 47366.5
  • GRAVY: 1.06004

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • PTS system, IIC component, L-ascorbate family
  • PFAM:
    no clan defined EIIC-GAT; PTS system sugar-specific permease component (PF03611; HMM-score: 482.2)
    and 1 more
    INSIG; Insulin-induced protein (INSIG) (PF07281; HMM-score: 10.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.036734
    • TAT(Tat/SPI): 0.000833
    • LIPO(Sec/SPII): 0.004989
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MQAILNFIVDILSQPAILVALIAFIGLIVQKKPAATITSGTIKTILGFLILSAGADVVVRSLEPFGKIFQHAFGVQGIVPNNEAIVSLALKDFGTTAALIMVCGMIVNILIARFTNLKYIFLTGHHTFYMAAFLAIILTVSHIKGWLTIVIGALVLGLIMAVLPALLQPTMRKITGNDQVALGHFGSISYFAAGAVGQLFKGKSKSTEEIKFPKGLSFLRESTISISITMALLYFIACLFAGVSYVHESISDGQNFIVFSLIQGVTFAAGVFIILTGVRLILAEIVPAFKGISEKLVPNSKPALDCPIVFPYAQNAVLIGFFVSFITGVIGMFILFLFGGVVILPGVVAHFFLGATAAVFGNARGGIKGAVAGAALNGILITFLPLLFLPFLGELGGAATTFSDTDFLTVGIVFGNAVKYMGLFGAILFIIIVGATAILLKGRQKPQQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA0318&oldid=94155"