From AureoWiki
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0399
  • pan locus tag?: SAUPAN002140000
  • symbol: SA0399
  • pan gene symbol?: lpl6
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0399
  • symbol: SA0399
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 459874..460356
  • length: 483
  • essential: no DEG

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGAATAGAAATACTAGGACCACAACCGGTTATTTTTCAATAGAAGAAATAGATTCAAGA
    AAAAGCCTTGATGAAAGAGAAACAGAAAAAAAGTATCCTGTGAAAATGATAAACAATAAA
    ATTATTCCAACTGAGGAGATAAAAGATGAAAAGTTGAAAAAGGAAATTGAAAACTTTAAG
    TTTTTTGTGCAATATGGCAGTTTTAAAGGAATAGAGAATTATGAAAATGGTGACATTTCC
    TATAATTCTGAAGCTCCTATTTATTCAGCGAAATATAAACTGAAAAATGATGATTATAAT
    GTTAAAGAATTACGAAAAAGATATAATATTCCAACAGAAAAGGCGCCTAAATTGTTGTTG
    AAAGGTTCGGGGGATTTGAAAGGGTCTTCAGTTGGATATAAGGAAATTGAATTTATATTT
    ATAGAAAATAAAAAAGAAAATATATATTTTTCAGATGGATTAAACTTAATTCCAAGTGAC
    TAA
    60
    120
    180
    240
    300
    360
    420
    480
    483


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0399
  • symbol: SA0399
  • description: hypothetical protein
  • length: 160
  • theoretical pI: 8.61109
  • theoretical MW: 18753.1
  • GRAVY: -0.9425

⊟Function[edit | edit source]

  • TIGRFAM:
    Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 219.5)
    and 1 more
    Genetic information processing Mobile and extrachromosomal element functions Transposon functions transposase, putative, N-terminal domain (TIGR01765; HMM-score: 10.8)
  • TheSEED  :
    • Tandem lipoprotein within Pathogenicity island
  • PFAM:
    LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 239.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.4428
    • Cytoplasmic Membrane Score: 0.0154
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.5414
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.010065
    • TAT(Tat/SPI): 0.000924
    • LIPO(Sec/SPII): 0.002617
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNRNTRTTTGYFSIEEIDSRKSLDERETEKKYPVKMINNKIIPTEEIKDEKLKKEIENFKFFVQYGSFKGIENYENGDISYNSEAPIYSAKYKLKNDDYNVKELRKRYNIPTEKAPKLLLKGSGDLKGSSVGYKEIEFIFIENKKENIYFSDGLNLIPSD

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA0399&oldid=126655"