PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA0462 [new locus tag: SA_RS02665 ]
• pan locus tag^?: SAUPAN002245000
• symbol: SA0462
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA0462 [new locus tag: SA_RS02665 ]
• symbol: SA0462
• product: hypothetical protein
• replicon: chromosome
• strand: +
• coordinates: 534713..536239
• length: 1527
• essential: no DEG other strains

⊟Accession numbers

• Gene ID: 1123253 NCBI
• RefSeq: NP_373714 NCBI
• BioCyc: see SA_RS02665
• MicrobesOnline: 102740 MicrobesOnline

⊟Phenotype

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⊟DNA sequence

• 1
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  1501
  
  ATGAAGCATAAAGAAGCATTTAATGGCGTTGTCGTGTTAACTGCTGCATTAATTGTCATT
  AAAATTCTGAGTGCTGTATATCGAATTCCATATCAAAATATATTAGGTGATACAGGTTTG
  TATGCATATCAACAAGTGTATCCAATTGTAGCATTAGGAATGATATTATCGATGAATGCC
  ATTCCTAGTGCAATTACACAAAATATAGGGAAGTATCATAGTGACGAAGCATATGCAAAA
  GCGGTCGCTTATATACAATTAGTTGGTATATTATTATTTATTGCTATTTTTGTGTTTGCG
  AACAATATTGCACATATGATGGGTGATAGCCATTTAACACCAATGATTCAAGCAGCAAGT
  TTAAGCTTTATATTTATAGGTATGCTTGGCGTGTTAAGAGGTTATTATCAATCTGCAAAT
  AATATGACAGTTCCGGCTATTTCCCAGGTTATAGAACAAGTTATACGAGTAGGTATTATC
  ATTGTTACTATTGTTATTTTTGTAGACAGAGGTTGGACGATATATGAAGCGGGAACAATT
  GCTATTTTAGCATCAACGATAGGTTTTTTAGGTTCTTCAATTTATTTAGTAGCGCACCGA
  CCTTTTAAGTTTAAAATGGTAAATAACACTGCAAAGATTGTTTGGAAACAGTTCGCACTT
  TCGGTTTTGATTTTCGCTATCAGTCAATTAATCGTAATTTTATGGCAAGTGATTGATAGT
  GTTACTATTATTAAGTCACTTCAAGCGATACGCGTGCCATTCGATGTTGCCATAACTGAA
  AAAGGAGTCTATGACCGTGGTGCATCATTTATTCAGATGGGATTGATTGTAACTACAACA
  TTTAGTTTTGCGCTCATTCCTCTGTTAAGTGACGCAATCAAAATGAATAATCAGGTACTT
  ATGAATCGTTATGCAAATGCGTCATTAAAGATTACGATTTTAATAAGTACAGCAGCGGGA
  ATAGGATTAATTAATTTATTGCCTTTAATGAACGGTGTGTTTTTTAAGACGAATGATTTA
  ACCTTAACGTTAAGTGTTTATATGATTACGGTCATTTGTGTATCGTTAATTATGATGGAT
  ATGGCTTTATTACAAGCGCAACATGCTGTGAGACCTATTTTTGTTGGTATGACGGCAGGA
  TTGGTTATTAAATTTATACTTAATATCATTTTGATTCGTTTAAGTGGCATTATTGGTGCG
  AGCATTAGTACTGTTGTATCATTAATTATATTCGGTACGATTATCCATATTGCTGTCACG
  AGAAAATACCACTTACATGCGATGAGACGATTTTTTATCAATGTTGTTTTAGGTATGGTA
  TTTATGTCGATTGTTGTTCAATGCGTGTTAAACATAGTGACAACACACGGTAGATTCACT
  GGACTCATTGAATTATTATGTGCAGCAGTATTAGGTATCATTGCATTGTTTTTCTATATT
  TTTAGATTTAATGTTTTGACATATAAAGAGTTAACTTATTTACCATTTGGTTCAAAGTTG
  TATCAAATTAAGAAAGGAAGACGTTGA
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  1527
  

⊟Protein

⊟General

• locus tag: SA0462 [new locus tag: SA_RS02665 ]
• symbol: SA0462
• description: hypothetical protein
• length: 508
• theoretical pI: 10.2435
• theoretical MW: 56127.3
• GRAVY: 0.943307

⊟Function

• TIGRFAM:
  Cellular processes Cellular processes Sporulation and germination stage V sporulation protein B (TIGR02900; HMM-score: 110.7)
• TheSEED  :
  • Uncharacterized membrane protein YabM
• PFAM:
  MviN_MATE (CL0222) Polysacc_synt; Polysaccharide biosynthesis protein (PF01943; HMM-score: 96.9)
  and 4 more
  Polysacc_synt_C; Polysaccharide biosynthesis C-terminal domain (PF14667; HMM-score: 71.1)
  Polysacc_synt_3; Polysaccharide biosynthesis protein (PF13440; HMM-score: 21.8)
  MatE; MatE (PF01554; HMM-score: 19)
  MVIN; MviN-like protein (PF03023; HMM-score: 9.4)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 14
• LocateP: Multi-transmembrane
  • Prediction by SwissProt Classification: Membrane
  • Pathway Prediction: Sec-(SPI)
  • Intracellular possibility: 0.17
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: -1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.097766
  • TAT(Tat/SPI): 0.001022
  • LIPO(Sec/SPII): 0.02855
• predicted transmembrane helices (TMHMM): 14

⊟Accession numbers

• GI: 15926181 NCBI
• RefSeq: NP_373714 NCBI
• UniProt: A0A0H3JT09 UniProt

⊟Protein sequence

• MKHKEAFNGVVVLTAALIVIKILSAVYRIPYQNILGDTGLYAYQQVYPIVALGMILSMNAIPSAITQNIGKYHSDEAYAKAVAYIQLVGILLFIAIFVFANNIAHMMGDSHLTPMIQAASLSFIFIGMLGVLRGYYQSANNMTVPAISQVIEQVIRVGIIIVTIVIFVDRGWTIYEAGTIAILASTIGFLGSSIYLVAHRPFKFKMVNNTAKIVWKQFALSVLIFAISQLIVILWQVIDSVTIIKSLQAIRVPFDVAITEKGVYDRGASFIQMGLIVTTTFSFALIPLLSDAIKMNNQVLMNRYANASLKITILISTAAGIGLINLLPLMNGVFFKTNDLTLTLSVYMITVICVSLIMMDMALLQAQHAVRPIFVGMTAGLVIKFILNIILIRLSGIIGASISTVVSLIIFGTIIHIAVTRKYHLHAMRRFFINVVLGMVFMSIVVQCVLNIVTTHGRFTGLIELLCAAVLGIIALFFYIFRFNVLTYKELTYLPFGSKLYQIKKGRR

⊟Experimental data

• experimentally validated: data available for COL, NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: rplY > pth > mfd > SA0462 > SA0463 > SA0464 > SA0465 > SA0466

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications