From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0651 [new locus tag: SA_RS03715 ]
  • pan locus tag?: SAUPAN002580000
  • symbol: SA0651
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0651 [new locus tag: SA_RS03715 ]
  • symbol: SA0651
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 744970..745422
  • length: 453
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGACAGTAAAAAATTTATTTTTAGGCTTTGTTGCTGTAATATTAACCGTTTGTTTAATT
    GGTTTATTAATATTAGCAACAAATGAAGATGCGCTTGCTAAGGTACATAAAACAATTAAT
    ACGCTTAACGCGATAAATGTATCAACTGAAGATACTTATAAAAAGAAAATGGATATTCTC
    AATATTCATACTGCTAAAGCATCTGAAGTGAATGAAAATGTGGAAAAGCAAAATCATTTT
    AAACATCGTGTGAATGCAAATAAATCAAATTCTTTTAACGAACAAGAGTGCCAAGTTATT
    GCTGATCGTTATGCAGATAAGCATATCAATGATAATTATGGTTTAGAAAGAATTTCTAAG
    ACAAATCATGGATATAATTATGTTTATTCCAATGATAATTCAACTAGTAAGCAACATGTA
    AGTATTTCAAATCAAGGCATAATAACGAAATAA
    60
    120
    180
    240
    300
    360
    420
    453

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0651 [new locus tag: SA_RS03715 ]
  • symbol: SA0651
  • description: hypothetical protein
  • length: 150
  • theoretical pI: 8.66817
  • theoretical MW: 16923
  • GRAVY: -0.448667

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01108521: hypothetical protein
  • PFAM:
    no clan defined SYCE1; Synaptonemal complex central element protein 1 (PF15233; HMM-score: 14)
    ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 12.8)
    and 1 more
    no clan defined Sarcolipin; Sarcolipin (PF05366; HMM-score: 8.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 3.33
    • Cellwall Score: 3.33
    • Extracellular Score: 3.33
    • Internal Helix: 1
  • LocateP: N-terminally anchored (with CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: EDALAKVH
  • SignalP: Signal peptide SP(Sec/SPI) length 33 aa
    • SP(Sec/SPI): 0.770928
    • TAT(Tat/SPI): 0.009975
    • LIPO(Sec/SPII): 0.049243
    • Cleavage Site: CS pos: 33-34. ALA-KV. Pr: 0.6706
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTVKNLFLGFVAVILTVCLIGLLILATNEDALAKVHKTINTLNAINVSTEDTYKKKMDILNIHTAKASEVNENVEKQNHFKHRVNANKSNSFNEQECQVIADRYADKHINDNYGLERISKTNHGYNYVYSNDNSTSKQHVSISNQGIITK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA0651&oldid=93569"