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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0880 [new locus tag: SA_RS04975 ]
  • pan locus tag?: SAUPAN003205000
  • symbol: SA0880
  • pan gene symbol?: ktrD
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0880 [new locus tag: SA_RS04975 ]
  • symbol: SA0880
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 999443..1000801
  • length: 1359
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    GTGTCAATTTTTAGCCAGTTTTTAAAAAGATCAAGCCCTCAACAAGGTATTGTATTGTAC
    TATATCGTCGCAATTGTCATTGCATTTTTATTATTAAACTTACCGTATGTTCATAAACCA
    GGTGTAGAAGTAAATCCAATTGACACATTATTTGTTGCCGTATCCGGAATTAGTGTTACT
    GGATTGTCTCCGATAAGTATTGTCGATACCTATTCTACATTTGGACAATTAATTATCCTC
    GTGATATTAAATATTGGTGGAATTGGCGTCATGGCAATTGGTACGATGTTATGGGTGGTA
    CTAGGTAAACATATTGGAATTAGAGAACGTCAGTTAATTATGTTAGATAATAACAAAAAC
    ACAATGAGTGGTACCGTCAAATTGATTATTGATATTGTAAAATCAATATTTGTAATCGAA
    CTCGTAGGAGCCATGTTATTAGCATTTTACTTTTATCGAGATAATCCAGATTTAAAATAT
    GCAATCATGCAAGGTGTTTTTGTTTCTATTTCTGCCACTACCAATGGTGGATTAGATATT
    ACAGGTAAGTCATTAATTCCTTATGCACATGATTATTTTGTACAAGCGATAGTTATATTT
    TTAATAATTTTAGGATCAATCGGCTTCCCAGTATTATTAGAAGTTAAAGCTTATATTCAA
    AATAGGGTTACTAATTTTAGATTTTCATTATTTACTAAAATTACGACATCAACATATTTA
    TTCCTATTTATTGTTGGGGTATTAGCCATTCTATTATTTGAACATAACCATGCGTTCAAA
    GGTTTAAGTTGGCATCAATCGTTATTCTATTCGCTGTTTCAATCAGCGACTACAAGAAGT
    GCGGGTCTTCAAACAATTGATGTGACAACACTAAGTGACCCCACTAATATTATCATGGGT
    ATTTTAATGTTTATAGGATCTTCGCCAAGTTCGGTTGGTGGCGGTATTCGTACAACAACT
    TTCGCTATTTTAATTTTGTTTTTAATTAACTTTAGTAATAATGCCGATAAAACATCCATT
    AAAGTTTACAATAGAGAAGTACACATTATGGATATTCAACGTTCATTTGCAGTATTTACA
    ATGGCGACAATTTTAACATTTTTAGGAATGCTAATTATATCAGCTACTGAAAATGGTAAG
    CTTACATTTTTACAAGTATTTTTTGAAGTCATGTCTGCATTTGGAACTTGTGGACTATCG
    CTTGGTGTCACAAGTGATATTAGTGATATTTCTAAGGTCGTACTAATGGTACTCATGTTT
    ATAGGACGTGTTGGCTTAATATCATTTATCATTATGATAGCAGGACGTCGAGAACCAGAT
    AAATTCCATTATCCAAAAGAACGTATTCAAATAGGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1359

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0880 [new locus tag: SA_RS04975 ]
  • symbol: SA0880
  • description: hypothetical protein
  • length: 452
  • theoretical pI: 9.57365
  • theoretical MW: 49908.9
  • GRAVY: 0.755752

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds potassium uptake protein, TrkH family (TIGR00933; HMM-score: 286.7)
    and 1 more
    Metabolism Transport and binding proteins Cations and iron carrying compounds potassium uptake protein, Trk family (TIGR00934; HMM-score: 81.4)
  • TheSEED  :
    • KtrCD potassium uptake system, integral membrane component KtrD
    Potassium metabolism Potassium metabolism - no subcategory Hyperosmotic potassium uptake  Potassium uptake protein, integral membrane component, KtrD
  • PFAM:
    Ion_channel (CL0030) TrkH; Cation transport protein (PF02386; HMM-score: 212.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.056074
    • TAT(Tat/SPI): 0.000646
    • LIPO(Sec/SPII): 0.001979
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSIFSQFLKRSSPQQGIVLYYIVAIVIAFLLLNLPYVHKPGVEVNPIDTLFVAVSGISVTGLSPISIVDTYSTFGQLIILVILNIGGIGVMAIGTMLWVVLGKHIGIRERQLIMLDNNKNTMSGTVKLIIDIVKSIFVIELVGAMLLAFYFYRDNPDLKYAIMQGVFVSISATTNGGLDITGKSLIPYAHDYFVQAIVIFLIILGSIGFPVLLEVKAYIQNRVTNFRFSLFTKITTSTYLFLFIVGVLAILLFEHNHAFKGLSWHQSLFYSLFQSATTRSAGLQTIDVTTLSDPTNIIMGILMFIGSSPSSVGGGIRTTTFAILILFLINFSNNADKTSIKVYNREVHIMDIQRSFAVFTMATILTFLGMLIISATENGKLTFLQVFFEVMSAFGTCGLSLGVTSDISDISKVVLMVLMFIGRVGLISFIIMIAGRREPDKFHYPKERIQIG

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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