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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA0889
- pan locus tag?: SAUPAN003229000
- symbol: SA0889
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA0889
- symbol: SA0889
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1010350..1010595
- length: 246
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1123712 NCBI
- RefSeq: NP_374156 NCBI
- BioCyc:
- MicrobesOnline: 103182 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241TTGACTAGAACTTATAATATTATTGGTATCCTTTCTTGTCTTATATCTTTTATTATTATG
GCGTTACCAATGATTTGGTACACAGCTTCAGCATTATGGTTCTTCCCAGGTGCAATCATG
ATATTGTTGTTATCTTTAGTCATTGTTTTTTGCTATATTAAAACGAAAAATCAATTACAT
TTATTACTAATCGTATTAAATATTATTATATTGCTTTTTTTCAGTTTACCGTTGTTACTT
TCATAA60
120
180
240
246
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA0889
- symbol: SA0889
- description: hypothetical protein
- length: 81
- theoretical pI: 9.28305
- theoretical MW: 9275.62
- GRAVY: 1.73457
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- FIG01107942: hypothetical protein
- PFAM: no clan defined Trep_Strep; Hypothetical bacterial integral membrane protein (Trep_Strep) (PF09605; HMM-score: 12.5)CcmH; Cytochrome C biogenesis protein (PF03918; HMM-score: 10.3)and 1 moreDUF5381; Family of unknown function (DUF5381) (PF17353; HMM-score: 6.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 3
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004274
- TAT(Tat/SPI): 0.001888
- LIPO(Sec/SPII): 0.096015
- predicted transmembrane helices (TMHMM): 3
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTRTYNIIGILSCLISFIIMALPMIWYTASALWFFPGAIMILLLSLVIVFCYIKTKNQLHLLLIVLNIIILLFFSLPLLLS
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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