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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1034
  • pan locus tag?: SAUPAN003462000
  • symbol: SA1034
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1034
  • symbol: SA1034
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1169810..1170448
  • length: 639
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    TTGGAAGTGATTTGTGGCAGTTATGAAGATTTAAACGTCTCTTTTTATGGCGGGCCTAAT
    GCTGAAAGAAAAAGAGCAATCATTTCGCCGAACTATTATGAACCTAAAGAAAGTGACTTT
    GAATTAACTTTAATGGAAATAGAGTATCCTGAAAAATTCGTCACTTTAAAACATCAACAT
    ATTTTAGGGACATTAATGTCTTTAGGTATCGAACGCGAACAAGTTGGAGATATAATTGTG
    AATGAACGAATTCAATTTGTTTTGACAAGTAGATTGGAATCATTTATTATGTTAGAATTA
    CAACGTATTAAAGGCGCATCAGTTAAACTTTATACTATTCCAGTAACAGATATGATACAA
    TCTAATGAGAATTGGAAAAATGAAAGTGCAACAGTTAGTTCTTTAAGGTTAGATGTTGTT
    ATTAAAGAAATGATACGTAAATCACGTACGATTGCGAAACAACTAATTGAAAAAAAACGT
    GTTAAAGTGAATCACACTATTGTTGATTCAGCAGATTTTCAATTACAAGCAAATGATTTA
    ATATCCATCCAAGGTTTTGGTAGAGCACACATTACTGACTTAGGTGGTAAAACTAAAAAA
    GATAAAACGCACATTACCTATAGAACATTATTCAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    639

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1034
  • symbol: SA1034
  • description: hypothetical protein
  • length: 212
  • theoretical pI: 8.89857
  • theoretical MW: 24367
  • GRAVY: -0.305189

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Photosynthesis photosystem II S4 domain protein (TIGR03069; HMM-score: 79.5)
    and 3 more
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uS4 (TIGR01017; HMM-score: 26.7)
    Genetic information processing Protein synthesis tRNA and rRNA base modification pseudouridine synthase, RluA family (TIGR00005; EC 5.4.99.-; HMM-score: 15.9)
    Unknown function General TlyA family rRNA methyltransferase/putative hemolysin (TIGR00478; HMM-score: 15.7)
  • TheSEED  :
    • Putative RNA-binding protein YlmH
    Cell Division Cluster  FIG001583: hypothetical protein, contains S4-like RNA binding domain
  • PFAM:
    S4 (CL0492) S4; S4 domain (PF01479; HMM-score: 39.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009348
    • TAT(Tat/SPI): 0.000132
    • LIPO(Sec/SPII): 0.001571
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MEVICGSYEDLNVSFYGGPNAERKRAIISPNYYEPKESDFELTLMEIEYPEKFVTLKHQHILGTLMSLGIEREQVGDIIVNERIQFVLTSRLESFIMLELQRIKGASVKLYTIPVTDMIQSNENWKNESATVSSLRLDVVIKEMIRKSRTIAKQLIEKKRVKVNHTIVDSADFQLQANDLISIQGFGRAHITDLGGKTKKDKTHITYRTLFK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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