From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1198 [new locus tag: SA_RS06815 ]
  • pan locus tag?: SAUPAN003759000
  • symbol: SA1198
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1198 [new locus tag: SA_RS06815 ]
  • symbol: SA1198
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1371042..1372073
  • length: 1032
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGGAACCAATATTAGAAATGATTAAAACATTAACAGGTATTAATAGTCCTTCAGGAGAC
    ACAGAAGAAGCAATTCAATTTGTCGAAAAATATGCAAAAGACTTGGGTTATCAAACAACA
    CTAACAAATAAAGGTGCGTTATTAATAACAGTGCCAGGCAAAAATGATGAAGTACAACGC
    TGTATTACTGCTCATGTTGATACTTTAGGTGCAATGGTTAAAGAAATTAAAGAAGATGGT
    CGCTTAGCAATAGAATTAATTGGAGGATTCACGTATAACGCGATTGAGGGTGAATATTGC
    CAAATTAAAACTGATGCTGGTCAAATATATACAGGAACAATTTGTCTGCATGAAACAAGT
    GTTCATGTATATAGAAATAATCATGAAATACCTAGAGATCAAAAGCATATGGAAATAAGA
    ATTGATGAAGTAACTACATCAGAAGAAGATACAAAGAGTTTAGGTATTTCAGTAGGTGAT
    TTTGTTAGCTTTGATCCACGTACAGTTATCACGTCATCAGGTTTTATTAAATCTCGTCAT
    TTAGATGATAAAGCTAGCGTAGCGATGATACTACAATTACTAAAGAAATTAAAAGAAGAG
    CAAATAATATTACCACATACAACGCAATTTTATATTTCTAATAACGAAGAAATAGGTTAC
    GGTGCAAATGCATCAATTGATTCGAAAATCAAAGAATATATTGCATTAGATATGGGCGCG
    TTGGGAGACGGTCAAGCATCGGATGAATATACAGTTTCTATTTGTGCCAAAGATGCTTCA
    GGTCCATATCATAAGCAATTGAAATCGCACCTAGTTAATCTTTGCAAAATAAATAACATT
    CCATATAAAGTAGACATATATCCATATTATGGTTCAGATGCTTCAGCAGCTTTACATGCT
    GGTGCGGATATCAGACATGGTTTATTTGGCGCTGGCATTGAATCATCTCATGCAATGGAA
    CGAACACATATTGATTCTATTAAAGCGACAGAGAAATTACTATATGCATATTGCTTATCA
    CCAATTGAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1032

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1198 [new locus tag: SA_RS06815 ]
  • symbol: SA1198
  • description: hypothetical protein
  • length: 343
  • theoretical pI: 5.13247
  • theoretical MW: 37855.6
  • GRAVY: -0.262099

⊟Function[edit | edit source]

  • TIGRFAM:
    hydrolase, peptidase M42 family (TIGR03106; HMM-score: 330.8)
    and 5 more
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides glutamyl aminopeptidase (TIGR03107; EC 3.4.11.7; HMM-score: 74.7)
    peptidase T-like protein (TIGR01883; HMM-score: 19.3)
    N-acetyl-ornithine/N-acetyl-lysine deacetylase (TIGR01902; HMM-score: 17.3)
    Xaa-His dipeptidase (TIGR01893; EC 3.4.13.20; HMM-score: 16.5)
    Metabolism Amino acid biosynthesis Aspartate family succinyl-diaminopimelate desuccinylase (TIGR01900; EC 3.5.1.18; HMM-score: 15.5)
  • TheSEED  :
    • Deblocking aminopeptidase
    Protein Metabolism Protein degradation Protein degradation  Deblocking aminopeptidase (EC 3.4.11.-)
  • PFAM:
    Peptidase_MH (CL0035) Peptidase_M42; M42 glutamyl aminopeptidase (PF05343; HMM-score: 297)
    and 2 more
    Peptidase_M20; Peptidase family M20/M25/M40 (PF01546; HMM-score: 31.8)
    Peptidase_M28; Peptidase family M28 (PF04389; HMM-score: 17)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: a divalent metal cation
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008337
    • TAT(Tat/SPI): 0.000642
    • LIPO(Sec/SPII): 0.000865
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MEPILEMIKTLTGINSPSGDTEEAIQFVEKYAKDLGYQTTLTNKGALLITVPGKNDEVQRCITAHVDTLGAMVKEIKEDGRLAIELIGGFTYNAIEGEYCQIKTDAGQIYTGTICLHETSVHVYRNNHEIPRDQKHMEIRIDEVTTSEEDTKSLGISVGDFVSFDPRTVITSSGFIKSRHLDDKASVAMILQLLKKLKEEQIILPHTTQFYISNNEEIGYGANASIDSKIKEYIALDMGALGDGQASDEYTVSICAKDASGPYHKQLKSHLVNLCKINNIPYKVDIYPYYGSDASAALHAGADIRHGLFGAGIESSHAMERTHIDSIKATEKLLYAYCLSPIE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA1198&oldid=86690"