From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1331 [new locus tag: SA_RS07545 ]
  • pan locus tag?: SAUPAN004033000
  • symbol: SA1331
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA1331 [new locus tag: SA_RS07545 ]
  • symbol: SA1331
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1538215..1539123
  • length: 909
  • essential: no DEG other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGCAAAAAAATATATTAAAAAGTGGTATTGCATTATCTGAATTAGGTCTAGGTTGCATG
    AGTTTAGGTACAGATTTAAAAAAAGCCGAACAAATTATAGATTGTGCTGTTGAAAATGGT
    ATCACTTATTTTGATACAGCAGACATGTACGATAAAGGTATAAATGAATCAGTTGTTGGT
    AAGGCACTTCTTAAATATCAACAACGCGATGATATTTTCATTGGTACAAAAGTAGGCAAT
    CGTTTAACAAAAGATGGCAGTACAACATGGGATCCGAGTAAATCCTATATTAAAGAGGCA
    GTTAAAGGTTCACTAAAGCGTTTAGGTATCGATCATATCGATTTATATCAACTTCATGGC
    GGAACCATTGATGACCCATTAGACGAAACAATAAGCGCATTTGATGAATTGAAACAAGAA
    GGAATTATACGTGCTTACGGTATTTCTTCTATTCGCCCAAATGTAATTGATTATTATTTA
    AAACATAGTCAAATCGAAACGATAATGTCTCAATTCAATTTGATTGATAATCGTCCAGAA
    TCATTATTAGATGCAATTCACAACAATGATGTTAAAGTATTGGCAAGAGGACCTGTGTCT
    AAAGGATTATTAACTTCAAACAGTGTTAATGTGCTCGACAATAAATTTAAAGATGGTATT
    TTTGATTATTCTCATGATGAATTGGGTGAAACAATAGCCTCTATTAAAGAAATTGAAAGT
    AATTTATCTGCATTGACATTTAGTTATTTAACATCACATGACGTGCTTGGTTCCATCATT
    GTAGGTGCAAGTAGCGTCGACCAATTAAAAGAAAATATTGAAAACTATCATACTAAAGTT
    GGTTTAGATCAGATTAAAACAGCAAGAGCTCGTGTAAAGGATTTGGAATATACCAATCAT
    TTAGTGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    909

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA1331 [new locus tag: SA_RS07545 ]
  • symbol: SA1331
  • description: hypothetical protein
  • length: 302
  • theoretical pI: 5.08293
  • theoretical MW: 33459.6
  • GRAVY: -0.277815

Function[edit | edit source]

  • TIGRFAM:
    voltage-dependent potassium channel beta subunit (TIGR01293; HMM-score: 74.7)
  • TheSEED  :
    • Uncharacterized oxidoreductase YqkF
  • PFAM:
    no clan defined Aldo_ket_red; Aldo/keto reductase family (PF00248; HMM-score: 176.4)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: Signal peptide LIPO(Sec/SPII) length 18 aa
    • SP(Sec/SPI): 0.142423
    • TAT(Tat/SPI): 0.002634
    • LIPO(Sec/SPII): 0.559405
    • Cleavage Site: CS pos: 18-19. GLG-CM. Pr: 0.5579
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MQKNILKSGIALSELGLGCMSLGTDLKKAEQIIDCAVENGITYFDTADMYDKGINESVVGKALLKYQQRDDIFIGTKVGNRLTKDGSTTWDPSKSYIKEAVKGSLKRLGIDHIDLYQLHGGTIDDPLDETISAFDELKQEGIIRAYGISSIRPNVIDYYLKHSQIETIMSQFNLIDNRPESLLDAIHNNDVKVLARGPVSKGLLTSNSVNVLDNKFKDGIFDYSHDELGETIASIKEIESNLSALTFSYLTSHDVLGSIIVGASSVDQLKENIENYHTKVGLDQIKTARARVKDLEYTNHLV

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]