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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA1541 [new locus tag: SA_RS08680 ]
- pan locus tag?: SAUPAN004373000
- symbol: tnp
- pan gene symbol?: tnp
- synonym:
- product: transposase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA1541 [new locus tag: SA_RS08680 ]
- symbol: tnp
- product: transposase
- replicon: chromosome
- strand: +
- coordinates: 1761714..1763033
- length: 1320
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 1124387 NCBI
- RefSeq: NP_374830 NCBI
- BioCyc: see SA_RS08680
- MicrobesOnline: 103856 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1261ATGTGTAATGATACCTTAGAATTACTAAGAATAAAAGATGAAAATATAAAATATATAAAC
CAAGAAATTGACGTCATTATCAAAGGAAAAAAAGCAACAGTGGTTAATGCTGTACTAACG
TATAAGCCTTCGGCCTGTTATTGTTGTGGAGTTAAAAATGAAGGACAAATTCATAAACAT
GGTAAGCGTGTTTCTCGTATTACTTTACTTAAAACTCAAGGGTATAACACATACCTCAAC
TTAGCTAAACAACGTTTTAAATGCTTAGAATGCAATGGCACTTTTACTGCTAAAACGTCA
ATTGTTGATGAGTCGTGTTTTATCTCAAGATGTGTTACTCAAAAAGTTATAGAAGAAGCT
ACTAAAGTTAAAACAGAGATTGATACTGCAGAAGATAACTGTATCTCTCCATCTACTGTA
AGTCGTATTAGAACTAAAGCGGCTAATTCATTACGAATTAAACCGTTTAATTGTTTGCCA
GAACACATCGCTATGGATGAATTTAAAAGCGTTAAAAATGTAACTGGATCAATGAGTTTC
ATTTTTATAGATAATGATACTCATGATGTTATAGATATTTTAGAAAATAGAACTACAAGA
TTCTTGCGTGCCTATTTCGAGCGATTCGATTTAAAAAATCGACAACAAGTTAAGACGGTT
ACTATTGACATGTATGAACCCTATGTCCGATTATTTCGCGACCTATTTCCTAATGCAGCT
ATTATTTTTGACAGATTCCATATCGTTCAACATTTAAATAGGGAACTTAATAAGTATCGT
GTACAAGTTATGAATGAATACCGTAATAAAAAAGGACCTAATTATACAATTTTTAAGAAT
AACTGGAAAGTTCTATTGATGGATACTAGTAAAACCATATTTAGTAAATACAGATGGAAT
AAATCTTTTAAGGCTTATAAACGCTCATCTGACATTGTAGAATTCATGCTTTCAAAAGAC
GATATACTACGACGCTCCTACGAACTTGTCCAAGGATTAAGAAAAGATCTAAGGTTATGT
AATTGGCCTAAATTTATTAATCGTTTAAATTCAGTTAGTAAAAAGTCTGTGAGTAAAGGT
GTATGGAAAGTGGTTAAATATTATAGAAAACATCAAAGGATGTTAAGAAATACAATTTAT
TACCCAGCATTTAATAATGGTGCTATAGAAGGAATTAATAATAAGATAAAATTAATCAAG
CGAATTTCTTTTGGTTACAGAAATTTCAACAACTTTAAAGCACGTATAATGATGATTTTC
AGCTTATACAAAGGAGAAAAAAAGAAGACAACCAAGCCCAATAATGGACTGGCCGCCTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA1541 [new locus tag: SA_RS08680 ]
- symbol: Tnp
- description: transposase
- length: 439
- theoretical pI: 10.4384
- theoretical MW: 51570.7
- GRAVY: -0.48656
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Detoxification S-(hydroxymethyl)glutathione synthase (TIGR02820; EC 4.4.1.22; HMM-score: 16.5)Central intermediary metabolism One-carbon metabolism S-(hydroxymethyl)glutathione synthase (TIGR02820; EC 4.4.1.22; HMM-score: 16.5)
- TheSEED :
- Mobile element protein
- ⊞PFAM: RNase_H (CL0219) DDE_Tnp_ISL3; Transposase (PF01610; HMM-score: 174.2)and 4 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MCNDTLELLRIKDENIKYINQEIDVIIKGKKATVVNAVLTYKPSACYCCGVKNEGQIHKHGKRVSRITLLKTQGYNTYLNLAKQRFKCLECNGTFTAKTSIVDESCFISRCVTQKVIEEATKVKTEIDTAEDNCISPSTVSRIRTKAANSLRIKPFNCLPEHIAMDEFKSVKNVTGSMSFIFIDNDTHDVIDILENRTTRFLRAYFERFDLKNRQQVKTVTIDMYEPYVRLFRDLFPNAAIIFDRFHIVQHLNRELNKYRVQVMNEYRNKKGPNYTIFKNNWKVLLMDTSKTIFSKYRWNKSFKAYKRSSDIVEFMLSKDDILRRSYELVQGLRKDLRLCNWPKFINRLNSVSKKSVSKGVWKVVKYYRKHQRMLRNTIYYPAFNNGAIEGINNKIKLIKRISFGYRNFNNFKARIMMIFSLYKGEKKKTTKPNNGLAA
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available