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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA1642 [new locus tag: SA_RS09240 ]
- pan locus tag?: SAUPAN004608000
- symbol: seg
- pan gene symbol?: seg
- synonym:
- product: extracellular enterotoxin type G
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA1642 [new locus tag: SA_RS09240 ]
- symbol: seg
- product: extracellular enterotoxin type G
- replicon: chromosome
- strand: -
- coordinates: 1876310..1877086
- length: 777
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 1124485 NCBI
- RefSeq: NP_374931 NCBI
- BioCyc: see SA_RS09240
- MicrobesOnline: 103957 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721ATGAAGAAATTATCTACTGTAATTATTATTTTGATTCTAGAAATAGTTTTTCATAATATG
AATTATGTGAATGCTCAACCCGATCCTAAATTAGACGAACTAAATAAAGTAAGTGATTAT
AAAAATAATAAGGGAACTATGGGTAATGTAATGAATCTTTATACGTCTCCACCTGTTGAA
GGAAGAGGAGTTATTAATTCTAGACAGTTTTTATCTCATGATTTAATTTTTCCAATTGAG
TATAAGAGTTATAATGAGGTTAAAACTGAATTAGAAAATACAGAATTAGCTAACAATTAT
AAAGATAAAAAAGTAGACATTTTTGGCGTTCCATATTTTTATACATGTATAATACCTAAA
TCTGAACCGGATATAAACCAAAATTTTGGAGGTTGTTGTATGTATGGTGGTCTTACATTT
AATAGTTCAGAAAATGAAAGAGATAAATTAATTACTGTACAGGTAACAATCGACAATAGA
CAATCACTTGGATTTACAATAACTACAAATAAGAATATGGTTACTATTCAGGAACTAGAT
TACAAAGCAAGACACTGGCTCACTAAAGAAAAAAAGCTATACGAGTTTGATGGTTCTGCA
TTTGAATCTGGATATATAAAATTTACTGAAAAGAACAATACAAGTTTTTGGTTTGACTTA
TTTCCTAAAAAAGAACTAGTACCTTTTGTTCCATATAAGTTTTTAAATATTTACGGAGAT
AATAAAGTTGTTGATTCTAAGAGTATTAAAATGGAAGTATTTCTTAATACTCACTGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA1642 [new locus tag: SA_RS09240 ]
- symbol: Seg
- description: extracellular enterotoxin type G
- length: 258
- theoretical pI: 6.93511
- theoretical MW: 29940
- GRAVY: -0.431008
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- Phage exotoxin
- Superantigen enterotoxin SEG
- PFAM: Ant-toxin_C (CL0386) Stap_Strp_tox_C; Staphylococcal/Streptococcal toxin, beta-grasp domain (PF02876; HMM-score: 80.6)and 1 moreOB_enterotoxin (CL0658) Stap_Strp_toxin; Staphylococcal/Streptococcal toxin, OB-fold domain (PF01123; HMM-score: 46.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0
- Extracellular Score: 10
- Internal Helices: 0
- LocateP: N-terminally anchored (No CS)
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: 0.5
- N-terminally Anchored Score: 5
- Predicted Cleavage Site: No CleavageSite
- SignalP: Signal peptide SP(Sec/SPI) length 25 aa
- SP(Sec/SPI): 0.97036
- TAT(Tat/SPI): 0.00034
- LIPO(Sec/SPII): 0.001058
- Cleavage Site: CS pos: 25-26. VNA-QP. Pr: 0.9417
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKKLSTVIIILILEIVFHNMNYVNAQPDPKLDELNKVSDYKNNKGTMGNVMNLYTSPPVEGRGVINSRQFLSHDLIFPIEYKSYNEVKTELENTELANNYKDKKVDIFGVPYFYTCIIPKSEPDINQNFGGCCMYGGLTFNSSENERDKLITVQVTIDNRQSLGFTITTNKNMVTIQELDYKARHWLTKEKKLYEFDGSAFESGYIKFTEKNNTSFWFDLFPKKELVPFVPYKFLNIYGDNKVVDSKSIKMEVFLNTH
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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