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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1943 [new locus tag: SA_RS11160 ]
  • pan locus tag?: SAUPAN005438000
  • symbol: SA1943
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1943 [new locus tag: SA_RS11160 ]
  • symbol: SA1943
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2192246..2193619
  • length: 1374
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGACAGCAGAAACGAATTATTTTTGGTTGAATTGTGGATATAACCGTTGGAATCATAAT
    GAACCGTTAGTAGGACAAACAGCTTTATTTGAATCAGGCGCACATTTTAACCCATCTCAA
    GGATTTAGAGCGTTTAAAAAGGCTAAAGTAGGAGATCAAGTCATCTTTTATCAAGTTCAG
    ACGGATACTGGACTACTTGGATGTGGTGAAATTATTAGTGTTGAAACAGGTGCACAAAAT
    AAAATACGTGTACAGTTTCGTTTTAATGAACAATTGAAACCATTAACAGCTGATTATTTA
    AAGCGTAGTGAAGCTTTGGAATTTCGTATGAGTAATATGAAAGAGACATTGTTCAACCAA
    ATCACTGCAGAAGAGTTTGATTTAATAAGTGGTCTTGGTAAAGGCGAAATTAAGATACCA
    CGTTATTTCTTTTTAGCTGAAACTGAAGAATTTGAACCTGGAAACCAATATACGATTTAT
    ACGCACACGTACAACGGTATTAAACGTAATGGTTATCATTTTTATACTCAGTTAGAAGAA
    GGCGACAATATTATTTTTTATAATCGAACGAAAAATCAATCTGTCGTTGGAATTGGAGAA
    GTTTCAAAGCATATTCATGAAAAACCACCAATTCCTGGTAGAACAAATAGTACAGTGATT
    GAAGTGTCTTATGAGAAAGACATTACGCCGATTACATTAAGTACATTAAATAAGCATCCT
    AAATTGAAAAATTTATATTTCCTTCAAGAAAATGCAAAACAGGCTATTGCAAGTATGTCA
    CAAGCACAGTATGATGCAATTATTGAAATGAGCGATAATAATGGATTGAAATCTCCATTT
    GAAATGGTTAAAAAACCAGATATGCTTGAAAGTGAAAAAGAAGAAGCGTTAAAGCCATTT
    ATTTTACTTGTTGTAGATCGAAAAGAAGAGGGCTTAAAAGCGGCTAATGACTTATTGCAA
    AAAGCGAATGCAAATCCTGTTATAACAACAGGTCATCCTGATTTTTCAGAAGATATGCTT
    TATGGCAAGTATTTACCAAATGAAACAGGGGCATTATACTATCGTGAAGGGTTTATTACT
    CAATTAATGCCTAAAAAGGATAAAAGTTATTTAGTTATTGATAATTTTAATCGTATAGAT
    ACAGACATTTTCCAAACGTATATTAATGTGTTAGAAGGCTATGAAGTAACATTACCACGT
    TATAATAAAGACGGTAATATGATTAAATGGTCACGACAAAAAGATTCTTTCTATTATTTC
    AATCCTAATTGGCATATTGTAGGTATTACATATGACAGTTTAGAGGAAATTAAGGAGAAA
    TATTCAGAGCAGTTTTTAAAATACACACGTATAGTCAAAGTCAAACATGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1374

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1943 [new locus tag: SA_RS11160 ]
  • symbol: SA1943
  • description: hypothetical protein
  • length: 457
  • theoretical pI: 6.21063
  • theoretical MW: 52964.6
  • GRAVY: -0.579431

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Hypothetical protein SAV2141
  • PFAM:
    PUA (CL0178) EVE; EVE domain (PF01878; HMM-score: 57.6)
    and 3 more
    P-loop_NTPase (CL0023) AAA_5; AAA domain (dynein-related subfamily) (PF07728; HMM-score: 18.6)
    no clan defined DUF365; Domain of unknown function (DUF365) (PF04033; HMM-score: 12.6)
    SpoVAE; Stage V sporulation protein AE1 (PF14097; HMM-score: 11.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.01947
    • TAT(Tat/SPI): 0.000353
    • LIPO(Sec/SPII): 0.002434
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVKKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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