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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1949 [new locus tag: SA_RS11190 ]
  • pan locus tag?: SAUPAN005448000
  • symbol: truncated-SA
  • pan gene symbol?: truncated-SA
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA1949 [new locus tag: SA_RS11190 ]
  • symbol: truncated-SA
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2198308..2198781
  • length: 474
  • essential: no DEG

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    TTGTTTACTTACTTTAAATCAGCATTTAAAAATGCTAAACCACAATTATTAATAACATTG
    ATATATGCACTTATAGCATTTGCTGTAATTGCAGTTGTATATTTACTTGCTAATTTCCAG
    CTTGCTAAGTATGCACAAACTATTGCAATTTATTCACAATTTGGGCAAAAACCACCAGTA
    GATGCATATTTAAAAGTTATCGCTGTATTACTTATAGCAGCTGTAGTTTCACTGTTTGTT
    TTAGTTCAAATTTTTATCGGAATTACAAATGTTATGAAACGAGCAATGAGTCATGAAAAA
    GTAAAATTTACCGATTTATTTATTGCATTTAAAAAAGGTAATTATTTAAAGAGCGTTCTG
    ATCGGTCTTGTATCTATAGCAATGATTATCGTTCTTTCACTTCTGACATCATTACTATAC
    AAATTATTTTCTCCAGTATCAGAAATGATTATGAATACATCTTATCAAGAGTAA
    60
    120
    180
    240
    300
    360
    420
    474

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA1949 [new locus tag: SA_RS11190 ]
  • symbol: Truncated-SA
  • description: hypothetical protein
  • length: 157
  • theoretical pI: 10.2391
  • theoretical MW: 17574.2
  • GRAVY: 0.965605

Function[edit | edit source]

  • TIGRFAM:
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides oligosaccharide repeat unit polymerase (TIGR04370; HMM-score: 9.5)
    TIGR03943 family protein (TIGR03943; HMM-score: 8.1)
  • TheSEED  :
    • Lytic regulatory protein
  • PFAM:
    no clan defined Sulf_transp; Sulphur transport (PF04143; HMM-score: 15.2)
    Abhydrolase_9_N; Alpha/beta-hydrolase family N-terminus (PF15420; HMM-score: 13)
    DUF624; Protein of unknown function, DUF624 (PF04854; HMM-score: 12.9)
    Yip1 (CL0112) Yip1; Yip1 domain (PF04893; HMM-score: 12.3)
    and 6 more
    no clan defined Sigma_reg_N; Sigma factor regulator N-terminal (PF13800; HMM-score: 6.7)
    Flp_Fap; Flp/Fap pilin component (PF04964; HMM-score: 6.4)
    NPCC; Nuclear pore complex component (PF08058; HMM-score: 6.3)
    DHHC; DHHC palmitoyltransferase (PF01529; HMM-score: 6.2)
    DUF4307; Domain of unknown function (DUF4307) (PF14155; HMM-score: 6.1)
    DUF2975; Protein of unknown function (DUF2975) (PF11188; HMM-score: 6)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.016051
    • TAT(Tat/SPI): 0.000434
    • LIPO(Sec/SPII): 0.00222
  • predicted transmembrane helices (TMHMM): 3

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNTSYQE

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]