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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA2010 [new locus tag: SA_RS11570 ]
- pan locus tag?: SAUPAN005638000
- symbol: SA2010
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA2010 [new locus tag: SA_RS11570 ]
- symbol: SA2010
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2282721..2283737
- length: 1017
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 1124927 NCBI
- RefSeq: NP_375322 NCBI
- BioCyc: see SA_RS11570
- MicrobesOnline: 104348 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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961ATGGAGAAAATTGAGAATGAAATAGTTAATAAGACATATCTTGCAATTAATTCTTTGGAA
GAATTAAGAAATATGATTGGTATTAAATCAGACTATTTTTATAAATGTCTTTATGTGAAT
GACCATTTTTATAATGTTATCAAAATACCTAAACGAAAAAAAGATGAATATAGAGAATTG
ATGATTCCTAATATGGCTCTCAAAAATATCCAAAGGTGGATTTTAGATAATGTATTGTAC
AGAAGGCAAGTTCATAAATGTGCAACTGGTTTTGTTCCTAGGAAATCAATAGTGAACAAT
GCAATCCCACACGTTGGGCAGAAATATATATTGAAAATGGATATAGAAAACTTTTTTCCG
AGTATCACATTTAAGCAGGTTAGAAAAATATTTTCTGAGATGGGCTATAAATTTGAACTT
GCGACAGCACTCGCAAATTTGTGTACAGTGAATAATCAGTTGCCTCAAGGTGCACCAACC
AGTCCATATATAGCTAATATCATCTTTTACAATATAGATAAAAGAATCTTTTCTTATTGT
CAAAAAAATAATTTGAGATATACTCGATATGCTGATGATATTACTATTTCTGGATCTAAT
AAAGTAAGTTTTAGTAAAGAAATTATCAGGGAAATAGTAAACCAATATAATTTTAGAATT
AATGAAAGTAAGACAATTATGTTTAAACCAGGAGACAGAAAAAAAGTTACTGGTATTATA
GTTAATGAAAAAATATCGGTTCCTAAAACTTTAATAAGAGAGGTCAGGAAGCAAATTTAT
TTTGTAAATAAGTTTGGATTAGAAGAACACTTAATTCGAAATAATTATTCATTGGATTAT
GAGCAGCAATTTATTATGAGTATATATGGAAAAATCAGTTTTATTAAAATGATTGATTTC
AAGAAAGGCGTTAGTTTACAAAAGAAATTTAATGAAGTACTAGGTAATATAGAATCGTCT
AACATGTACAGAGATAATATTGACTTTGATGATATAGAACTACATTGGATAAATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA2010 [new locus tag: SA_RS11570 ]
- symbol: SA2010
- description: hypothetical protein
- length: 338
- theoretical pI: 9.87997
- theoretical MW: 40062.3
- GRAVY: -0.369822
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Other group II intron reverse transcriptase/maturase (TIGR04416; EC 2.7.7.49; HMM-score: 60.7)
- TheSEED :
- Retron-type RNA-directed DNA polymerase (EC 2.7.7.49)
- PFAM: RdRP (CL0027) RVT_1; Reverse transcriptase (RNA-dependent DNA polymerase) (PF00078; HMM-score: 93.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005738
- TAT(Tat/SPI): 0.000127
- LIPO(Sec/SPII): 0.000959
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MEKIENEIVNKTYLAINSLEELRNMIGIKSDYFYKCLYVNDHFYNVIKIPKRKKDEYRELMIPNMALKNIQRWILDNVLYRRQVHKCATGFVPRKSIVNNAIPHVGQKYILKMDIENFFPSITFKQVRKIFSEMGYKFELATALANLCTVNNQLPQGAPTSPYIANIIFYNIDKRIFSYCQKNNLRYTRYADDITISGSNKVSFSKEIIREIVNQYNFRINESKTIMFKPGDRKKVTGIIVNEKISVPKTLIREVRKQIYFVNKFGLEEHLIRNNYSLDYEQQFIMSIYGKISFIKMIDFKKGVSLQKKFNEVLGNIESSNMYRDNIDFDDIELHWIN
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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