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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2264 [new locus tag: SA_RS12995 ]
  • pan locus tag?: SAUPAN006041000
  • symbol: SA2264
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA2264 [new locus tag: SA_RS12995 ]
  • symbol: SA2264
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2541721..2542131
  • length: 411
  • essential: no DEG

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGTCGAAAAAGAAAATTTTAATATTAACTAGTATTATGTTAATCATATTAATTAGTGTT
    GCAAGTATCTATTTTAAAATGAAATATGACGAAAAAGAAAAACAAAAATCAATTTATTAT
    AAAGAACAACAAGCGCGCATTACACTTTATCTTAAGCATAATACTATAGAACCGAACACA
    ATCAAATCTGTACATTTCACAAAATTGGAAACAAGTCCTATGGGAAGTGCTGTGATTGAA
    GGTTACATAAATGAAAATAAAGAAGATGATTTTGTTGCCTATGCATCACCTGAAAATAAC
    TTTCAATTTGTAGGTGATTTAATTAAAAGTGAAAGATTAAGTGAGTTACTAAAACCAGCG
    CATCAATTAAAATCACCAGATGATATAAAAAAAGAACTAAATAAAAAGTAG
    60
    120
    180
    240
    300
    360
    411


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA2264 [new locus tag: SA_RS12995 ]
  • symbol: SA2264
  • description: hypothetical protein
  • length: 136
  • theoretical pI: 9.63777
  • theoretical MW: 15786.3
  • GRAVY: -0.466176

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Electron transport ubiquinol oxidase, subunit II (TIGR01433; EC 1.10.3.-; HMM-score: 13.1)
    Metabolism Transport and binding proteins Other efflux pump membrane protein (TIGR00998; HMM-score: 11.5)
  • TheSEED  :
    • FIG01108221: hypothetical protein
  • PFAM:
    no clan defined DUF1433; Protein of unknown function (DUF1433) (PF07252; HMM-score: 124.9)
    and 3 more
    Viral_Beta_CD; Viral Beta C/D like family (PF04530; HMM-score: 19.1)
    Sec66; Preprotein translocase subunit Sec66 (PF09802; HMM-score: 13.7)
    Holin-II (CL0563) Phage_holin_2_1; Bacteriophage P21 holin S (PF04971; HMM-score: 11.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0006
    • Cytoplasmic Membrane Score: 0.6103
    • Cell wall & surface Score: 0.0012
    • Extracellular Score: 0.3879
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0
    • N-terminally Anchored Score: 2
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.20685
    • TAT(Tat/SPI): 0.001211
    • LIPO(Sec/SPII): 0.102674
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSKKKILILTSIMLIILISVASIYFKMKYDEKEKQKSIYYKEQQARITLYLKHNTIEPNTIKSVHFTKLETSPMGSAVIEGYINENKEDDFVAYASPENNFQFVGDLIKSERLSELLKPAHQLKSPDDIKKELNKK

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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