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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA2389 [new locus tag: SA_RS13675 ]
- pan locus tag?: SAUPAN006291000
- symbol: truncated-SA
- pan gene symbol?: truncated-SA
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA2389 [new locus tag: SA_RS13675 ]
- symbol: truncated-SA
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2677802..2678308
- length: 507
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 1125318 NCBI
- RefSeq: NP_375715 NCBI
- BioCyc: see SA_RS13675
- MicrobesOnline: 104741 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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481ATGACAAAAATTTTTAAAATATCATTTTTGATTTTGTTAGTAGTAATTGTTTCTAGTTAT
TATGGTGAAAGTTTTGTCTTAGCTGATAATAATCCTATCGTCAATTCAGAAAATGGTAGT
GATAATAATTTTGAATCAGGAACAATTGAACGTAATCAAAATGAGCTTTATGAAGTAGGT
GATTATAGTACGCCCTTAACTGAGCGAGTTTTCGGTAAAGATCAAAGAACGGTTGTTAAT
AATATTTTACAAAGACCTTATAAGCAGACTGTATTATTAAATATGACGTTTTCAAATAAC
CGTGTATATAAAGGCACCGGTACTATGATTGGTAAGGACATTGTATTGACAGCGGCTCAT
AATGTCTATTCTAAAGACGATAAGGGTTGGGCTAAAAAGATTGATGTCTATGCTGGAGTA
AATGGGCAAACATATACAATAGGAAAGGCCTTTTCGCATAAGTTTTTTGTATCTAAAACT
TGGATTAATAATTTAACCATAGTATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA2389 [new locus tag: SA_RS13675 ]
- symbol: Truncated-SA
- description: hypothetical protein
- length: 168
- theoretical pI: 9.43222
- theoretical MW: 18967.4
- GRAVY: -0.227381
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0.01
- Cytoplasmic Membrane Score: 0.09
- Cellwall Score: 0.18
- Extracellular Score: 9.72
- Internal Helix: 1
- LocateP: Secretory(released) (with CS)
- Prediction by SwissProt Classification: Extracellular
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: 0.5
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: LADNNPIV
- SignalP: Signal peptide SP(Sec/SPI) length 28 aa
- SP(Sec/SPI): 0.931214
- TAT(Tat/SPI): 0.001001
- LIPO(Sec/SPII): 0.023714
- Cleavage Site: CS pos: 28-29. VLA-DN. Pr: 0.8612
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTKIFKISFLILLVVIVSSYYGESFVLADNNPIVNSENGSDNNFESGTIERNQNELYEVGDYSTPLTERVFGKDQRTVVNNILQRPYKQTVLLNMTFSNNRVYKGTGTMIGKDIVLTAAHNVYSKDDKGWAKKIDVYAGVNGQTYTIGKAFSHKFFVSKTWINNLTIV
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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