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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA2407 [new locus tag: SA_RS13775 ]
- pan locus tag?: SAUPAN006316000
- symbol: SA2407
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA2407 [new locus tag: SA_RS13775 ]
- symbol: SA2407
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 2697987..2698553
- length: 567
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1125336 NCBI
- RefSeq: NP_375733 NCBI
- BioCyc: see SA_RS13775
- MicrobesOnline: 104759 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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541ATGATGACTCGTTCTCAGAACAAACAGCAACAATTAGAACAAGCAAAAGATATTGTAATT
AATTCAATTGGACAGACAATGGATTTGTATGGCACTAATAGAAGTGTAGGAAACTTATAT
GGCACTATGGTGTTTGAAGGCAGTATGACGCTTGATGAAATGCGTCATCAATTGCAAATG
AGCAAACCAAGTATGAGTGCTGGCGTTAAGAAATTGCAGGAATTTGATATTGTTAAACAA
CAATTTACGAGAGGAAGCCGCAAACAACATTTTATCGCCGAGAAAGACTTTTTCATCTTT
TTCCGAAACTTTTTCACTAAAAAATTTCAGCGTGAAATTGACATCAATGTCGAAGCAGTA
AAAGATGCTCAAGCTATTATCAATCCATTACTTGAAAGCAGTGATTTAACTGAAGCTGAA
ACACAAGAGGCACAAAAAATTAAAGCTCAGCTTGATCATACACATGTTTATTACGAATGG
TTAGAACAGTTAACCGAAGCGATTGAAAGCGGTGAAATTTTCAAATATTTCCCAATTCCA
GAACAGCCTTCTGATTCTGAAAATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA2407 [new locus tag: SA_RS13775 ]
- symbol: SA2407
- description: hypothetical protein
- length: 188
- theoretical pI: 4.9468
- theoretical MW: 21873.6
- GRAVY: -0.618617
⊟Function[edit | edit source]
- TIGRFAM: Amino acid biosynthesis Aromatic amino acid family anthranilate synthase component I (TIGR01820; EC 4.1.3.27; HMM-score: 14.9)and 1 moreRegulatory functions DNA interactions CRISPR locus-related DNA-binding protein (TIGR01884; HMM-score: 11.3)
- TheSEED :
- Betaine operon transcriptional regulator
- PFAM: HTH (CL0123) HTH_20; Helix-turn-helix domain (PF12840; HMM-score: 13.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.007871
- TAT(Tat/SPI): 0.002712
- LIPO(Sec/SPII): 0.000831
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MMTRSQNKQQQLEQAKDIVINSIGQTMDLYGTNRSVGNLYGTMVFEGSMTLDEMRHQLQMSKPSMSAGVKKLQEFDIVKQQFTRGSRKQHFIAEKDFFIFFRNFFTKKFQREIDINVEAVKDAQAIINPLLESSDLTEAETQEAQKIKAQLDHTHVYYEWLEQLTEAIESGEIFKYFPIPEQPSDSEN
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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